Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30329g00012 ATGCCCCATAACAATAAAGATTCTGATTATGAAGAAGAACCAGCAGCTAATGAGGAGAATTATTGTGTGATGATGAGTAGTGGCAAAGTGGTAAATAATAGTGAAAGGAACAAAGTATGTGCAAGAGGGCATTGGAGGCCTGAAGAAGATTCCAAGCTGAAGGAGCTTGTGGCTCTTCATGGCCCTCACAACTGGAAACTCATTGCTCAGAATCTAGAAGGAAGATCAGCGAAGAGTTGTAGGTTGAGATGGTTGAACCAATTAGATCCAAGAATAAAGAAGAAGCCATTGAGTGAAGAGGAGGAAGAGAGGCTAATGGAGGCACATAGAGTGTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTTCCTGGCAGAACAGATAATGCTATCAAGAACCACTGGCATGTTATTATGGCTAGAAACTGCAGGCAACACAAGAAATCCATTGCTTCAAGGACAAACAAAAACCATATTAACACCCTTCTCTTCAGTAGTAGTAGAAATAATAAGTCAAATAACACCAACACTACTACTACTACTACTCACATGGCTGCTGCTGCTGCTACTTGTTGGAGACAACAACATGATAATAATAATGAAGAGGACTCTTATGGCTTCTATAATCAACAACAGTTTCCTTTTGATTATTATTTCTTCTCTG 664 0.3991 MPHNNKDSDYEEEPAANEENYCVMMSSGKVVNNSERNKVCARGHWRPEEDSKLKELVALHGPHNWKLIAQNLEGRSAKSCRLRWLNQLDPRIKKKPLSEEEEERLMEAHRVYGNKWAMIARLFPGRTDNAIKNHWHVIMARNCRQHKKSIASRTNKNHINTLLFSSSRNNKSNNTNTTTTTTHMAAAAATCWRQQHDNNNEEDSYGFYNQQQFPFDYYFFS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30329g00012 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 88 IPR017930 -
Stsc30329g00012 221 ProSiteProfiles Myb-like domain profile. 89 139 IPR001005 -
Stsc30329g00012 221 FunFam MYB transcription factor 42 93 - -
Stsc30329g00012 221 CDD SANT 45 86 IPR001005 -
Stsc30329g00012 221 Gene3D - 42 93 - -
Stsc30329g00012 221 Pfam Myb-like DNA-binding domain 97 137 IPR001005 -
Stsc30329g00012 221 Pfam Myb-like DNA-binding domain 42 88 IPR001005 -
Stsc30329g00012 221 Gene3D - 96 188 - -
Stsc30329g00012 221 PANTHER MYB PROTEIN-RELATED 42 175 - -
Stsc30329g00012 221 CDD SANT 105 136 IPR001005 -
Stsc30329g00012 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 143 IPR017930 -
Stsc30329g00012 221 ProSiteProfiles Myb-like domain profile. 42 88 IPR001005 -
Stsc30329g00012 221 SUPERFAMILY Homeodomain-like 42 135 IPR009057 -
Stsc30329g00012 221 SMART sant 41 90 IPR001005 -
Stsc30329g00012 221 SMART sant 93 141 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30329g00012 Stsc-Chr30329 96450 99671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30329g00012 40 163 MYB Transcription Factor Family AT1G69560 66.935 3.66e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30329g00012 Myb_DNA-binding 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30329g00012 K09422 - gmx:100789305 200.29