Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30329g00010 ATGCATGAACAGATCATCCATCTTATGACGACGACAACGACAGCAATACCACTCTCCCTTCACTTCTTTCTCCCTCGGAACCCAAAACCCTTGCAAAACCCTAATTTCACCCTAAAATTCCAAAACCCCCCTTTCAAACTCAGACCCCAATTTTCTCGGGAAACAATCACCCCTCCTTCCTCCACCGACCGCGGCCTCATTTTCCAGGAAAAAGTTCAATACCTCAAGAATCTCAACGTGAACCCACAGAAAGCCTTCCAAGTAAACCCTAACCTACGATCTACACCACTCTCCACCCTCAAATCCGTCGAGCAATGCCTCTCTTCCATGGGAATCCACCGCTCCGCCATGGGAAGAATCCTCGACATGCTCCCGGAGCTTCTCAACCGCGACCCCGACATGGACCTCTACCCAATCCTCGATTTCCTCCTCAACGACGTCGGAATCCCTTACCCCGATGTTCGCAAATCGATCTTGCGGTGCCCTAGGCTCTTGATCTCAAGTGTGGAGGAGCAATTGAAGCCAACGCTGAAATTCCTTATGAAATTAGGGTTCACCGGTTCGAATTCCCTCACGTGTCAGAACACAGTGCTACTTGTTTCGAGCGTGGACGGAACGCTCGCTCCCAAGATCGAGTTCTTGAAAAGCCTGGGGCTTTCAGAATTGGAGGTGAATTACATGATTGTGAGGTCCCCTGCTTTGTTAACATATAGTGTAGAGAAGAATTTGAAGCCTAAAGTTGAGTACTTTTTGAACGAGATGAATGGGAACATTTCAGAGTTGAAGAGGTTTCCACAGTATTTTTCATTTAGCTTGGAAGGGAGGATTAAGCCAAGGCATAAGGTGTTGGTTGAGAATGGGGTGAAACTACCTTTGTATCTTATGTTGAAGGGCGATGATGGTGGGTTCTATGAAACACTTATTAATACCCGGTTAAGAAAGCTTGATGGGAGATAG 957 0.4713 MHEQIIHLMTTTTTAIPLSLHFFLPRNPKPLQNPNFTLKFQNPPFKLRPQFSRETITPPSSTDRGLIFQEKVQYLKNLNVNPQKAFQVNPNLRSTPLSTLKSVEQCLSSMGIHRSAMGRILDMLPELLNRDPDMDLYPILDFLLNDVGIPYPDVRKSILRCPRLLISSVEEQLKPTLKFLMKLGFTGSNSLTCQNTVLLVSSVDGTLAPKIEFLKSLGLSELEVNYMIVRSPALLTYSVEKNLKPKVEYFLNEMNGNISELKRFPQYFSFSLEGRIKPRHKVLVENGVKLPLYLMLKGDDGGFYETLINTRLRKLDGR 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30329g00010 318 PANTHER CGI-12 PROTEIN-RELATED 218 309 IPR003690 GO:0003690|GO:0006355
Stsc30329g00010 318 Gene3D Transcription termination factor 3, mitochondrial 69 316 IPR038538 -
Stsc30329g00010 318 SMART mt_12 118 150 IPR003690 GO:0003690|GO:0006355
Stsc30329g00010 318 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Stsc30329g00010 318 SMART mt_12 83 113 IPR003690 GO:0003690|GO:0006355
Stsc30329g00010 318 SMART mt_12 225 257 IPR003690 GO:0003690|GO:0006355
Stsc30329g00010 318 SMART mt_12 155 186 IPR003690 GO:0003690|GO:0006355
Stsc30329g00010 318 SMART mt_12 189 220 IPR003690 GO:0003690|GO:0006355
Stsc30329g00010 318 Pfam mTERF 68 182 IPR003690 GO:0003690|GO:0006355
Stsc30329g00010 318 Pfam mTERF 144 301 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30329g00010 Stsc-Chr30329 47796 48752 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc30329g00010 mTERF 8.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30329g00010 K15031 - gmx:100785219 347.051