Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30328g00002 ATGGAGAAAGCAGAAGGGCAGATTAGTTTAGAAAGTGATATTATTCCATCTGATCCACCAGCTGGCACGGTTCAAGGAATCACTCAAAGTGATTCTGAGAAAGAGTTAGATTCAGAGAAGAGAAAGGCAAAAGATGAAGCGAAAAACAAAATCCCCTTCCACAAGCTCTTTTCTTTTGCAGACCCTTTGGATTATGCATTGATGATTGTGGGGACAATCGGTGCTGTTGGAAATGGAATGGCAAATCCCTTGATGACCGTTGTTTTTGGGAATTTGATTGATGCATTTGGAGGGACCTCAAACTCCCATAAAGTTGTTCATGATGTTTCCAAGCTTGCTCTGAAGTTTGTATACCTGGCTCTGGGTTCATTTGCAGGATCTTTTCTTCGTAAGTACTAG 399 0.4135 MEKAEGQISLESDIIPSDPPAGTVQGITQSDSEKELDSEKRKAKDEAKNKIPFHKLFSFADPLDYALMIVGTIGAVGNGMANPLMTVVFGNLIDAFGGTSNSHKVVHDVSKLALKFVYLALGSFAGSFLRKY 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30328g00002 132 Coils Coil 130 132 - -
Stsc30328g00002 132 Pfam ABC transporter transmembrane region 68 132 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30328g00002 132 SUPERFAMILY ABC transporter transmembrane region 56 132 IPR036640 GO:0005524|GO:0016020
Stsc30328g00002 132 PANTHER ABC TRANSPORTER B FAMILY 29 131 IPR039421 -
Stsc30328g00002 132 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 69 132 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30328g00002 132 MobiDBLite consensus disorder prediction 1 45 - -
Stsc30328g00002 132 Gene3D ABC transporter type 1, transmembrane domain 47 132 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30328g00002 Stsc-Chr30328 10777 11274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30328g00002 51 128 Calmodulin-binding Proteins AT2G36910 39.241 1.01e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30328g00002 K05658 - lja:Lj4g3v2227840.1 130.954