Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30328g00001 ATGCCAGAGGTTTCTTGTTGGATTGTCTCCGGGGAGAGACAGTCTGCAAGAATAAGAAGTTTATACCTAAAAACAATTATGAGGCAAGATGCCAGCTTCTTCGATACGGAAACCAACACCGGCGAGGTTGTTGGAAGGATGTCAAGTGACACTATGCTAATTCGCGAAGCCATGGGTGAGAAGGTAGGACAGTGTATACAGTTAGTGGGATCATTTGTTGGAAGTTTCATCATAGCCTTCATCAAGGGATGGCTTCTTACTCTTGTCTTGATGTCCTGTATTCCGCCTCTTGTTCTTGCTAGCGCCGTGATGAGTATCGTTATTGCGAAAGTGACGACGCGAAGACAAGTAGCATATTCTACAGCAGCATCTACAGCAGAGGAGACAATTAGTTCAATCAGAACTGTTGCATCGTTCACAGGCGAGAAGCAAGCCGTGGCGAAGTATAATCAGTCGTTGTTGAAAGCTTATAAGACCGGAGTGCAAGAAGGAGTGGCTTCTGGACTGGGATTTGGTTCGGTTCTTCTCATTGCTTTCTGCACTTATGCTTTGGCCATATGTTCTCTTGGACAAGCATCTCCTAGCATGAGTTCTATTGCAGCAGGACAAGTCGCAGCTTATAAGATGTTTGAAACAATCAGTAGGCGACCTAAAATCGATGCTTACGACACAACAGGCCGAAAGCTTGACGATATTTGCGGCGATATAGAATTGAGAGAAGTTCGCTTCAGTTATCCGTCGAGGCCGGACGAGACTATATTCAACGGATTCTCTTTGTCCATACCAAGCGGCATAACTGTGGCCTTGGTAGGGCAAAGTGGGAGTGGAAAATCAACGGTTATTAGCTTGATAGAGAGGTTTTATGATCCACAAGCTGGCGAAGTTCTCATCGACAACATCAATCTCAAAGATTTTAATCTGAAATGGATAAGACAAAAGATTGGCCTAGTTAGCCAAGAACCTGTCCTATTTACTTGCAGCATCAAAGAAAATATTGCTTATGGTAAGGATGGTGCGACTGATGAAGAAATCAAAGAAGCAATAGATATTGCAAATGCTTCTAAGTTCATCGACATGCTTCCGCAGGAGGCTCTTGACAAAATCATGATAAATCGAACTACCGTTATTGTTGCTCATCGCTTAAGCACTATCAGAAATGCTGCCACTATAGCCGTAATTCATCAAGGCAAAATAGTAGAAAAAGGTCCACATTCTGAGCTCATTAAAGATCCTGAAGGAGCCTACAGCCAACTCAACAGATTGCAAGAGACTAACAGTGACACAGAGCAAAATTTTTCTGTTGAAACAGAAAACTTTGAATCTACTACAATTTCTTCAAGGCATTCAAGTCAGCGGTTTTCTTTTAGAAAATCCATAACCCAAGTTTCCAGCGTTGGAAATGGAAACAGCGGCCGCCTTTCGTCCTCATCGCCTACTAAGACTGCCGTCGCCGGCAAAGAAGACAACAAAGTTACTCTTTCAGTAGACACAAACTCAGAACAACCGCTGAAGATATCGATCCGTCGCTTAGCTAAACTAAACAAGCCTGAGATCCCAGTCTTAATATTAGGCACCATAGCTGCAGTGGCCAATGGCATCATATTACCCTTTTTCGGGTTCATGGTTTCGAAAATGGTCAACATTTTCTTCGAGCCAGTGGATGAGCTTCGCAAAGATTCAAGAACATGGGCCTATGTCTTCATTGCACTTGGCGTGGCAGCATTCATTATCACCCCCTTGAGGTCCTACTTCTTTTCGGTTGCTGGTGAAAAGTTAGTTAAGAGAATGAGGCTAATCTGTTTCGAGAAAATGATCAGCATGGAAGTTAGTTGGTTCGATGAAGCTGAGAATTCAAGTGGCGCACTTGGAGCAAGGTTGTCCACTGATGCAGCTTCAATTCGAGCTTTGGTCGGCGATGCGCTGGGATTAATGGTTCAGAACATGGCTACTGCTGTTGCTGGCGTGGCGATTGCATTCCAAGCAAACTGGCAACTCTCTCTTATAATTCTTGTATTGCTGCCTATATTAGCACTAAATGGAATTCTTCAGCTCAAGTTCTTGCAAGGATTCACTGCGGATGGAAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCAACTGATGCTGTAAGCAGCAACAGGACTGTCGCATCTTTCTGTGCTGAGGAGAAGGTGATGGAGTTGTACAAGAAGAAATGTGAGGCACCGATTAAGGCAGGGATAAAGCAAGGGATAATAAGCGGAGTTGGTTTTGGGTTATCATTCTTATTCCTGTTTTCAGTGTATGCATGCAGTTTCTACGCTGGGGCTAAGCTTTTAGGGGATGGTAAAGCCTCTTTCTCAGATGTTTTCCGCGTCTTCTTTGCCTTGAATATGGCTGCTGTGGGGATGTCTCTAACTAGTACCTTGGCCCCTGATTCAGCTAAAGCTAAAAATGCTGCTGCATCTGTATTAGCCATTATTGATAGAAAATCCAAAGTAGATCCCAATGATGACAATGGATTGATTCTAGAAAACTTGAAGGGAGAAGTAGAGTTTCACCATGTCACTTTCAAGTACCCTACAAGACCTGATGTTCAAATATTTAAAGATCTTTGCTTGACCATTTATTCTGGCAAGACAGTTGCACTGGTTGGTGAAAGTGGAAGTGGGAAATCAACTGTGATATCATTGTTACAAAGATTTTACGACCCAGATTCAGGTCATATCACACTTGACGGAATAGATATCCAGAAAATTCAAGTTACATGGTTAAGGCAACAAATGGGCTTGGTAAGCCAAGAACCTATTTTGTTTAATGACACGATCAGAGGTAACATTGCTTATGGAAAGGGAGGAACAGATGCAACAGAGGCAGAGATTATAGATGCAGCAAAGATGGCAAATGCCCACAAGTTCATCAGTAGTTTGCAGCAGGGTTATGATACGAATGTGGGGGAAAGAGGATCAAAACTATCCGGAGGACAGAAGCAGCGTGTGGCAATTGCAAGAGCAATAGTAAAGAATCCAAAAATATTACTGCTAGATGAAGCCACCAGTGCCCTTGATGCAGAGTCTGAAAAGGTTGTTCAAGATGCACTAGATCGTGTAATGGTGGAACGAACCACAATCATAGTAGCTCATAGGCTATCCACTATTAAGAATGCAGATTTAATAGCAGTGGTTAAGAATGGGGTCATTGTAGAAAAAGGAAATCATGAAACGTTGATCAACAACGGTGGTCATTATGCTTCCTTGGTAGCATTGCACACAAGTACATCATAA 3261 0.4287 MPEVSCWIVSGERQSARIRSLYLKTIMRQDASFFDTETNTGEVVGRMSSDTMLIREAMGEKVGQCIQLVGSFVGSFIIAFIKGWLLTLVLMSCIPPLVLASAVMSIVIAKVTTRRQVAYSTAASTAEETISSIRTVASFTGEKQAVAKYNQSLLKAYKTGVQEGVASGLGFGSVLLIAFCTYALAICSLGQASPSMSSIAAGQVAAYKMFETISRRPKIDAYDTTGRKLDDICGDIELREVRFSYPSRPDETIFNGFSLSIPSGITVALVGQSGSGKSTVISLIERFYDPQAGEVLIDNINLKDFNLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIKEAIDIANASKFIDMLPQEALDKIMINRTTVIVAHRLSTIRNAATIAVIHQGKIVEKGPHSELIKDPEGAYSQLNRLQETNSDTEQNFSVETENFESTTISSRHSSQRFSFRKSITQVSSVGNGNSGRLSSSSPTKTAVAGKEDNKVTLSVDTNSEQPLKISIRRLAKLNKPEIPVLILGTIAAVANGIILPFFGFMVSKMVNIFFEPVDELRKDSRTWAYVFIALGVAAFIITPLRSYFFSVAGEKLVKRMRLICFEKMISMEVSWFDEAENSSGALGARLSTDAASIRALVGDALGLMVQNMATAVAGVAIAFQANWQLSLIILVLLPILALNGILQLKFLQGFTADGKKLYEEASQVATDAVSSNRTVASFCAEEKVMELYKKKCEAPIKAGIKQGIISGVGFGLSFLFLFSVYACSFYAGAKLLGDGKASFSDVFRVFFALNMAAVGMSLTSTLAPDSAKAKNAAASVLAIIDRKSKVDPNDDNGLILENLKGEVEFHHVTFKYPTRPDVQIFKDLCLTIYSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGIDIQKIQVTWLRQQMGLVSQEPILFNDTIRGNIAYGKGGTDATEAEIIDAAKMANAHKFISSLQQGYDTNVGERGSKLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVERTTIIVAHRLSTIKNADLIAVVKNGVIVEKGNHETLINNGGHYASLVALHTSTS 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30328g00001 1086 Pfam ABC transporter transmembrane region 521 793 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30328g00001 1086 Pfam ABC transporter transmembrane region 4 213 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30328g00001 1086 Pfam ABC transporter 255 353 IPR003439 GO:0005524
Stsc30328g00001 1086 Gene3D - 226 365 IPR027417 -
Stsc30328g00001 1086 Gene3D - 834 1085 IPR027417 -
Stsc30328g00001 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 831 1081 IPR027417 -
Stsc30328g00001 1086 Gene3D ABC transporter type 1, transmembrane domain 490 831 IPR036640 GO:0005524|GO:0016020
Stsc30328g00001 1086 CDD ABC_MTABC3_MDL1_MDL2 843 1079 - -
Stsc30328g00001 1086 SUPERFAMILY ABC transporter transmembrane region 504 828 IPR036640 GO:0005524|GO:0016020
Stsc30328g00001 1086 PANTHER ABC TRANSPORTER B FAMILY 362 423 IPR039421 -
Stsc30328g00001 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 422 IPR027417 -
Stsc30328g00001 1086 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 843 1081 IPR003439 GO:0005524
Stsc30328g00001 1086 Gene3D ABC transporter type 1, transmembrane domain 2 215 IPR036640 GO:0005524|GO:0016020
Stsc30328g00001 1086 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 186 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30328g00001 1086 SUPERFAMILY ABC transporter transmembrane region 6 220 IPR036640 GO:0005524|GO:0016020
Stsc30328g00001 1086 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 522 808 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30328g00001 1086 CDD ABC_6TM_Pgp_ABCB1_D1_like 3 209 - -
Stsc30328g00001 1086 Pfam ABC transporter 862 1012 IPR003439 GO:0005524
Stsc30328g00001 1086 FunFam ABC transporter B family member 1 833 1083 - -
Stsc30328g00001 1086 FunFam ABC transporter B family member 1 501 809 - -
Stsc30328g00001 1086 ProSitePatterns ABC transporters family signature. 984 998 IPR017871 GO:0005524|GO:0016887
Stsc30328g00001 1086 SMART AAA_5 263 404 IPR003593 GO:0016887
Stsc30328g00001 1086 SMART AAA_5 870 1064 IPR003593 GO:0016887
Stsc30328g00001 1086 MobiDBLite consensus disorder prediction 463 483 - -
Stsc30328g00001 1086 MobiDBLite consensus disorder prediction 463 488 - -
Stsc30328g00001 1086 CDD ABC_6TM_Pgp_ABCB1_D2_like 511 826 - -
Stsc30328g00001 1086 Gene3D - 366 442 IPR027417 -
Stsc30328g00001 1086 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 236 495 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30328g00001 Stsc-Chr30328 1699 10053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30328g00001 3 1085 Calmodulin-binding Proteins AT2G36910 40.034 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30328g00001 K05658 - qsa:O6P43_021947 1445.25