Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30326g00014 ATGGAGTTTGTGGCAGAAGAAAATCCAAGTCCTTTGTTGGGTTCTTCTTCCTTTGTTGAGAGGGTGAACATGGTTGGTAGCCATGCCCTCTCTGCCATTCTTAGAAACATCTTCTCTGCCATCTTTACCTTCTGCTTTGCATTAGTGGGAACATTGTTAGGGGCTATGACTGGAGCTCTGATAGGACAAGAAACAGAGAGTGGATTCATAAGAGGTGCTGCCATTGGAGCCATTTCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCTTCTCTTGTTCTTTGGCAATCTGAAGAATCTGGAATTGGCTGCCTCTTATATTACTTGATTGATGTAATTGCAAGCCTATTGAGTGGGAGACTTGTGAGAGAAAGGATTGGTCCAGCCATGTTAAGTGCTGTCCAAAGTCAGATGGGTGCTGTAGAGATTGACTTTGATGATGTTCAAAACATCTTTGACATTGGTGGTGCAAAAGGCTTATCAAGAGATTCAGTTGAAAAGATCTCAAAGATCACAATTACAAGTGACAACAATGTTGATGCTTCTGGTGAAAAGGTTTCTTGCTCAGTTTGCCTTCAGGACTTTCAAATTGGAGAAACAGTTAGAAGTTTGCCTCATTGCCATCACATGTTTCACCTACCTTGCATTGACAAGTGGCTCATAAGGCATGGATCTTGCCCCCTATGTAGAAGGGATCTGTAA 702 0.4202 MEFVAEENPSPLLGSSSFVERVNMVGSHALSAILRNIFSAIFTFCFALVGTLLGAMTGALIGQETESGFIRGAAIGAISGAVFSIEVFESSLVLWQSEESGIGCLLYYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVEIDFDDVQNIFDIGGAKGLSRDSVEKISKITITSDNNVDASGEKVSCSVCLQDFQIGETVRSLPHCHHMFHLPCIDKWLIRHGSCPLCRRDL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30326g00014 233 SMART ring_2 188 229 IPR001841 -
Stsc30326g00014 233 Pfam Ring finger domain 187 230 IPR001841 -
Stsc30326g00014 233 FunFam NEP1-interacting protein-like 1 148 233 - -
Stsc30326g00014 233 ProSiteProfiles Zinc finger RING-type profile. 188 230 IPR001841 -
Stsc30326g00014 233 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 19 232 IPR044523 -
Stsc30326g00014 233 SUPERFAMILY RING/U-box 187 233 - -
Stsc30326g00014 233 Pfam YMGG-like Gly-zipper 46 82 IPR027367 -
Stsc30326g00014 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 233 IPR013083 -
Stsc30326g00014 233 CDD RING-H2_NIPL1-like 187 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30326g00014 Stsc-Chr30326 76319 79774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30326g00014 17 233 C3H Transcription Factor Family AT5G66070 76.498 9.49e-115 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30326g00014 - - gmx:100816939 381.719