Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30326g00013 ATGAATTATCTTCATCACAGAAATCCACCCATTGTGCATAGAGACCTAAAGTCTTCTAATCTGCTTGTCGATAAAAACTGGACTGTCAAGGTTGGAGACTTTGGTTTGTCAAGGTTGAAGGATGCAACTTTATTGACTTCAAAGTCTGGAAGAGGCACTCCTCAATGGATGGCCCCTGAAGTCCTACGAAATGAGCCTTCTAATGAAAAGTCTGATGTGTACAGTTTTGGTGTGATCCTCTGGGAACTAATGACTCAATCCATTCCATGGGAAAATTTGAATTCCTTACAGGTGGTTGGAGTAGTAGGATTTATGGATAGAAGACTTGATCTTCCAGAAGGGCTTGATCCCCAAGTGGCATCAGTCATTCGCGACTGCTGGCAAAGCGACCCAGAACAACGCCCATCGTTTCAAGAGCTAATAAAGAGAATGGTGTTCCTTGTCAACAAAGTAAACCCTGTGTCAATTCGGAGAGTTTCAGAATCATAA 489 0.4254 MNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDATLLTSKSGRGTPQWMAPEVLRNEPSNEKSDVYSFGVILWELMTQSIPWENLNSLQVVGVVGFMDRRLDLPEGLDPQVASVIRDCWQSDPEQRPSFQELIKRMVFLVNKVNPVSIRRVSES 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30326g00013 162 SMART serkin_6 1 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30326g00013 162 ProSitePatterns Serine/Threonine protein kinases active-site signature. 11 23 IPR008271 GO:0004672|GO:0006468
Stsc30326g00013 162 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 144 - -
Stsc30326g00013 162 FunFam PAS domain-containing protein tyrosine kinase family protein 1 158 - -
Stsc30326g00013 162 Pfam Protein tyrosine and serine/threonine kinase 1 143 IPR001245 GO:0004672|GO:0006468
Stsc30326g00013 162 Gene3D Transferase(Phosphotransferase) domain 1 1 155 - -
Stsc30326g00013 162 ProSiteProfiles Protein kinase domain profile. 1 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30326g00013 162 PRINTS Tyrosine kinase catalytic domain signature 5 23 IPR001245 GO:0004672|GO:0006468
Stsc30326g00013 162 PRINTS Tyrosine kinase catalytic domain signature 71 93 IPR001245 GO:0004672|GO:0006468
Stsc30326g00013 162 PRINTS Tyrosine kinase catalytic domain signature 115 137 IPR001245 GO:0004672|GO:0006468
Stsc30326g00013 162 PRINTS Tyrosine kinase catalytic domain signature 52 62 IPR001245 GO:0004672|GO:0006468
Stsc30326g00013 162 SUPERFAMILY Protein kinase-like (PK-like) 1 153 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30326g00013 Stsc-Chr30326 68411 70630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30326g00013 1 150 MAP Kinase Kinase Kinase AT4G23050 78.000 6.21e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Stsc30326g00013 PK_Tyr_Ser-Thr 7.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30326g00013 - - gmx:100813707 310.071