Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30326g00012 ATGGAGAATAGTAGCAGTGGAAATGCAACAACAAATCACATGATGTTGGGATTTCTTGCTGGAATTTCAACAGTTATGTTAGTTGCTGCCTTATTGTTCTGCCTCTTTGGGACAAAGCTCATTGCACATTTCAGACAACATAGGAATCTGAAATTGAAAGGCAAAGAGCACAAAAGCTTCAAAGATGAATCAATGCCAGTAAGGCGTTTTAGCTTTGAGGAAATAGAGAGAGCTACAAAGAACTTTAGCCAAGACTGCTTAGTTGGTTCTGGTGCATTTGGAAATGTTTACAAAGGAAACTTTGAATTAGAAGGAACTTTAGCTATTAAGCGAGCTCATGGCGAATCCTTCTTAAGCGTCGAAGAATTCCAAAACGAAGTTAAGCTCCTTGCAGCTGTGAAGCACAGAAATCTTATTGGTCTGGTGGGGTATTGTGAAGAACCAGAAGGATTTGGAGCAAGAATTCTGGTATATGAATATGTACCAAATGGCTCTCTCCTTGAATATATGATTGGAAATAGGAATAGCTTGACTTGGAAGCAAAGAGTGAAAATAGCAATAGGAGCAGCTAGAGGCATAGCTTATTTACACGAAGGAGTAAAGCCGAGTATAATTCATCGTGATCTCAAACCAAGCAACATCCTGTTAGGAGAAGGTTTCGAGGCTAAGGTGTCGGATTTCGGGTTGGTGAAATCCGGCCCTACCGGGGACCAATCGCATGTGAGTAGCCAAGTCAAAGGGACACCGGGGTATCTTGATCCGGCGTATTGTTCAAGCTTTCACTTGACAAAATTCACTGATGTTTATAGCTTTGGAGTCATACTTCTTCAACTTATTTCAGCTAGACCTGCTGTTGATGCAAATGAGGTACCAAGCAAGCAACATATCATTGATTGGGCAAGCCCTAGCTTAGAGAAGGGTAATGTTGAAGAAATCATAGATGCAAACCTTCTATGTCAAAGTGAGGCATGCAATATGAGAGTTATGCTGAAGATGGGTCAACTTGCTTTAAGATGTGTAGTTCAAGAACCAAAAAGTAGACCTACAATGATTCAAGTGTGTCAAGAACTAGAGCAAGCACTATACTCTGAAGATACCTTCAACAACAAGCAACCTTGTTCAAAGGGTTTCCTTAGATCAATTGGATTGTCTCAGCAACAACCCTCAGTGGAAAACAATGATTGCTCTCAGAGCTTTGTGAGCATAGATGGTGTTGGGCTTCAGAAATTCCACATTGATATGGATAGCTTATCATTTCAAAGCACAAGGTTAATGTGCCTAGAAAATAATAGTATAAGTATTGATATTGATAAGAACAACTTGAAGAGAATTCAAGAGGATGGTGACATATGA 1353 0.3999 MENSSSGNATTNHMMLGFLAGISTVMLVAALLFCLFGTKLIAHFRQHRNLKLKGKEHKSFKDESMPVRRFSFEEIERATKNFSQDCLVGSGAFGNVYKGNFELEGTLAIKRAHGESFLSVEEFQNEVKLLAAVKHRNLIGLVGYCEEPEGFGARILVYEYVPNGSLLEYMIGNRNSLTWKQRVKIAIGAARGIAYLHEGVKPSIIHRDLKPSNILLGEGFEAKVSDFGLVKSGPTGDQSHVSSQVKGTPGYLDPAYCSSFHLTKFTDVYSFGVILLQLISARPAVDANEVPSKQHIIDWASPSLEKGNVEEIIDANLLCQSEACNMRVMLKMGQLALRCVVQEPKSRPTMIQVCQELEQALYSEDTFNNKQPCSKGFLRSIGLSQQQPSVENNDCSQSFVSIDGVGLQKFHIDMDSLSFQSTRLMCLENNSISIDIDKNNLKRIQEDGDI 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30326g00012 450 Gene3D Phosphorylase Kinase; domain 1 42 160 - -
Stsc30326g00012 450 SUPERFAMILY Protein kinase-like (PK-like) 62 358 IPR011009 -
Stsc30326g00012 450 ProSitePatterns Protein kinases ATP-binding region signature. 88 110 IPR017441 GO:0005524
Stsc30326g00012 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Stsc30326g00012 450 PANTHER OS01G0750732 PROTEIN 21 373 - -
Stsc30326g00012 450 Pfam Protein tyrosine and serine/threonine kinase 87 357 IPR001245 GO:0004672|GO:0006468
Stsc30326g00012 450 FunFam Putative LRR receptor-like serine/threonine-protein kinase 46 160 - -
Stsc30326g00012 450 ProSiteProfiles Protein kinase domain profile. 82 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30326g00012 450 CDD STKc_IRAK 88 359 - -
Stsc30326g00012 450 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 161 364 - -
Stsc30326g00012 450 SMART serkin_6 82 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30326g00012 450 Gene3D Transferase(Phosphotransferase) domain 1 161 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30326g00012 Stsc-Chr30326 62899 65349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30326g00012 68 408 Receptor kinase-like Gene Family AT1G30570 40.805 1.62e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc30326g00012 PK_Tyr_Ser-Thr 1.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30326g00012 - - var:108328541 639.032