Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30324g00008 ATGGACCTCTTAGCCGCCGTCACCGCCGCCGCTGACGCCGACAACTTCCCGCTCCCAGACCACGTCTCGCCCTTCTCCGATTCCACTGACCTCCTCTACGCCGCCATTCCACCCTCCATCCGCCACAACCCCCAGAAGCTCCGCCCAATCCGATCCGTCGCTGCCGCTAGAGCCTCCTCTTCCCACCGTAACGACCAGCTTCTAGAAGAACCTCCTGGGACTGGCGGTTCCCCTCCGATTGAAGAAGATCGACCTGGTTCCGGGTCGGGTCACGGGCGAACCGTTCCATTGTGTCAGGAATCCGGCTCATCTTTGGATGATGATGGTACTGACATCGAAAATTCGTCGGGGAGTGCCAAACACCCTGGCTTGGCGAAGGGAAAGAGGAAGATGGAGAGAAGACTCGAAGATTTCGTGCAGGATATGGTAAAGAAGGTGATGGAAAAGCAAGAGCAGATGCACAAACAATTAGTGGACATGATTGAAAAGAAGGAGAAGGAGAGAGTGATGAGAGAAGAAGCTTGGAAGCGGCAAGAGATGGAGAGAATAAGGAAGGACGAAGAGGCCAGAAACCAAGAGAGGTCGCGAAACTTAGCCCTCATATCTGTCATCGAAAACCTGCTTGGCCATGAGATTCAAATCCCGCAACCGGCAGAGGTAAGCCGCAAAGGAGAAGAGGATGGACTCCGACACAGAAGTGAGGAAGCGAATGCTCAAAAGAGTCTCGGCGTCAGTGGTGAGGCAAATAACAACAGGTGGCCAGATGTTGAAGTTCAATCACTCATAAACTTGAGAACTTCAATGGAGCAGAAATTTCTTCTTATGGGATCCAAGGTATCAATATGGGAGGAGATATCCGAAGCAATGAATAAGATAGGATACAACCGTTCTGCGAAGAAGTGCAAGGAAAAATGGGAGAACATCAACAAGTACTATAAAAGGACGGTTGGGAGCGGCAAGAAACGGCGTCAAAATAGTAAAACCTGCCCTTACTTTAATGAGTTGGATGTTCTATATAGCAATGGTCTCCTCAATCCTGGAAACCCCTTAAGCAGTAGTACCAATGATGTATCCAAGATTGCAAAGGAGGAAAGTGAAACTTGA 1104 0.4991 MDLLAAVTAAADADNFPLPDHVSPFSDSTDLLYAAIPPSIRHNPQKLRPIRSVAAARASSSHRNDQLLEEPPGTGGSPPIEEDRPGSGSGHGRTVPLCQESGSSLDDDGTDIENSSGSAKHPGLAKGKRKMERRLEDFVQDMVKKVMEKQEQMHKQLVDMIEKKEKERVMREEAWKRQEMERIRKDEEARNQERSRNLALISVIENLLGHEIQIPQPAEVSRKGEEDGLRHRSEEANAQKSLGVSGEANNNRWPDVEVQSLINLRTSMEQKFLLMGSKVSIWEEISEAMNKIGYNRSAKKCKEKWENINKYYKRTVGSGKKRRQNSKTCPYFNELDVLYSNGLLNPGNPLSSSTNDVSKIAKEESET 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30324g00008 367 SMART sant 249 311 IPR001005 -
Stsc30324g00008 367 Coils Coil 147 167 - -
Stsc30324g00008 367 MobiDBLite consensus disorder prediction 94 117 - -
Stsc30324g00008 367 MobiDBLite consensus disorder prediction 216 248 - -
Stsc30324g00008 367 ProSiteProfiles Myb-like domain profile. 245 309 IPR001005 -
Stsc30324g00008 367 Pfam Myb/SANT-like DNA-binding domain 251 337 IPR044822 -
Stsc30324g00008 367 PANTHER FI21293P1 72 357 - -
Stsc30324g00008 367 CDD GT1 251 315 - -
Stsc30324g00008 367 Gene3D - 253 314 - -
Stsc30324g00008 367 FunFam Trihelix transcription factor GT-2 253 314 - -
Stsc30324g00008 367 MobiDBLite consensus disorder prediction 42 131 - -
Stsc30324g00008 367 MobiDBLite consensus disorder prediction 220 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30324g00008 Stsc-Chr30324 59005 61019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30324g00008 127 339 Trihelix Transcription Factor Family AT5G47660 44.395 1.25e-51 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc30324g00008 Myb_DNA-bind_4 6.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30324g00008 - - adu:107482818 504.212