LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30323g00002	ATGGATCGGAGCTCCTTCTCTACCGGAACCCGGAAGGCCCGACCCAAATCCGATATATACTCTACCTTCGTCGTCCACGATGATGAGGGCGGAGACGGCGGAACAATCCGGCGCCGGAAATCAGGAATCCCGGAGTCACAGGAGGATCCGTACGGGACAATGGTGTACAAAGAGAACGGTCACGAAGACGATGACGAAGACTCTTCCCTCCCTCCACTCCTCAAGCGCCTCCCTAAGGACTTCGGCGGCGGTGCCTCGATGGATTACGACGAGGAGGACGACGACGAAGGTGCCGGAGATTTTGGCACCATGATCGTGAAGACTGACCGGAGCAGGCAGAGGGAGCGATCTTCTTCTTCCGGCATGGTTTCGCCGTCGGGATCGACGTGGAAGGCTCGGAGTTCTTCTCAGGCAAGCGTGGGCGGAGACAACGACGATGACGATGAGGACGGTGGCGGTTTCGGGACGTTCGTTGTGCGCTCGACGGCGAGATCGACTGAGAGAGAGTCGATAAGCGGAACCGTGGTGCGGAGGACCTCCGGCAGCAGTGGTGTCGGTTCGACAATGGAGAGGGCGGTGGCGAGCATGCAGGCGGTGGGAGAATTCGGGAAGCAGAGGAAAGGGAGCGGTTCCTGGCAGAACGAGGATGCGAGGCAGCAATCCTTAACGACGAAGATTTCGACGAGTTCGATTCCTGAGAGTGTTACCAGAGAGGATCCTACAACCAAGTATGAATTGCTCTATGAACTTGGGAAGGGATCCTATGGAGCTGTTTACAAAGCAAGGGATATAAGGACATCGGAGATGGTTGCTATCAAAGTCATATCATTATCTGAAGGGGAGGAGGGATATGAGGAAATCCGCGGTGAGATTGAGATGTTACAACAGTGTAATCATCCAAATGTTGTCCGTTATCTTGGGAGCTACCAAGGAGAAGAGTATCTTTGGATAGTGATGGAATACTGTGGTGGTGGTAGTGTTGCTGATCTGATGAACGTGACTGATGAAGCACTGGATGAGGGTCAAATAGCATATATCTGTAGAGAAGCACTGAAGGGACTTGAGTACTTGCACTCAATTTTCAAAGTCCATAGAGACATTAAAGGTGGGAATATCTTATTAACTGAACAAGGAGATGTCAAGCTAGGGGATTTTGGTGTTGCTGCACAGCTGACAAGGACTATGTCAAAGCGCAATACATTCATTGGAACCCCCCATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGCTATGACGGAAAGGTAGATGTTTGGGCTCTTGGTGTGTCCGCGATTGAAATGGCTGAGGGAGTTCCTCCAAGATCATCAGTGCATCCAATGAGGGTTTTATTCATGATATCCATTGAGCCAGCTCCAATGCTTGAGGATAAAGAAAAATGGTCTCTATATTTTCATGATTTTGTTGCGAAGTGCCTGACCAAAGAGCCTCGGCTCCGCCCCACTGCATCTGAGATGTTGAAGCATAAATTTTTTGAAAAATGGAAAACCGGATCTGCTTCCATGTTGCCAAAACTGGAAAAGGCAAGGCAAATCAGGGCGTCAATGGCTTTGCAGGTGCAAACGCTTCCCCCAACCCCAGAAGATGAGCCTATGGTAGCTTCCATGCTAAATGATGAATATGGAGATACTGTTCCATCTGGACTTCAGAACCTAGCTGTGCAGGAGGCCGCTGATCTCTCTTCAAGTGGTGGTGAGAGGAAGCAGAATAAGTTGGAAGATGATGCAGGTGAAGGAAACTTTGGAACCATGATAGTCCATGGAGATCAGGTACATAAGATCACACCGGATGGAGATGCTTCAGGTTCCTTATCTGCCTCCGCCGGTGGAACGGGATTGGCCGACTCTGGAGGATCTAGTCCTCCTGCAGATACCATACAATCAACTTTACCTCGCGTTAGAAATTCAACTGAGCAGAGCCTCAAAACAATGAGTAGTTTTCGTGCACACACTGGAATTGGTAGTGATATAAGCAATAGCACGTTGAAGAATGATACAGTCTTCCGCAAGTCATTTGCTTTACAGGATAAGTTATGGTCCATTTATGCAGCTGGTAATACAGTGCCCATTCCATTCTTAAGGGCTACAGACATATCCCCTATTGCTCTCCTGTCAGATAATGTGCTTGGTGGCTTGCAACCAGATACCAGTGAGACTGGGGAAGTAGAATCATTGCAAGAGCTTTTTAGTGGTGATGTTCAATCCAAAAAGGGTCGGAGAGGACTAAATGAGCAGATGCCCCTTCCTCCAAGCATTTACCAGCGGCTTACATCAAGTTCTACTCTAATGAATTTAGCTCAGGCTTTAGCTTATCATAAGATGTGTTACGAAGATATGCCACTGCAGGAGCTGCAAGCAACGCAGGAGCAGCGGACAATTCAAAATCTCTCGGACACACTTAGAACCATTCTTCGTTTGTAG	2439	0.4883	MDRSSFSTGTRKARPKSDIYSTFVVHDDEGGDGGTIRRRKSGIPESQEDPYGTMVYKENGHEDDDEDSSLPPLLKRLPKDFGGGASMDYDEEDDDEGAGDFGTMIVKTDRSRQRERSSSSGMVSPSGSTWKARSSSQASVGGDNDDDDEDGGGFGTFVVRSTARSTERESISGTVVRRTSGSSGVGSTMERAVASMQAVGEFGKQRKGSGSWQNEDARQQSLTTKISTSSIPESVTREDPTTKYELLYELGKGSYGAVYKARDIRTSEMVAIKVISLSEGEEGYEEIRGEIEMLQQCNHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTDEALDEGQIAYICREALKGLEYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGVPPRSSVHPMRVLFMISIEPAPMLEDKEKWSLYFHDFVAKCLTKEPRLRPTASEMLKHKFFEKWKTGSASMLPKLEKARQIRASMALQVQTLPPTPEDEPMVASMLNDEYGDTVPSGLQNLAVQEAADLSSSGGERKQNKLEDDAGEGNFGTMIVHGDQVHKITPDGDASGSLSASAGGTGLADSGGSSPPADTIQSTLPRVRNSTEQSLKTMSSFRAHTGIGSDISNSTLKNDTVFRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGLQPDTSETGEVESLQELFSGDVQSKKGRRGLNEQMPLPPSIYQRLTSSSTLMNLAQALAYHKMCYEDMPLQELQATQEQRTIQNLSDTLRTILRL	812

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30323g00002	812	FunFam	serine/threonine-protein kinase dst1 isoform X1	241	531	-	-
	Stsc30323g00002	812	MobiDBLite	consensus disorder prediction	563	646	-	-
	Stsc30323g00002	812	MobiDBLite	consensus disorder prediction	117	141	-	-
	Stsc30323g00002	812	Gene3D	Transferase(Phosphotransferase) domain 1	240	529	-	-
	Stsc30323g00002	812	MobiDBLite	consensus disorder prediction	21	45	-	-
	Stsc30323g00002	812	MobiDBLite	consensus disorder prediction	159	188	-	-
	Stsc30323g00002	812	FunFam	Aurora kinase A	236	325	-	-
	Stsc30323g00002	812	MobiDBLite	consensus disorder prediction	606	646	-	-
	Stsc30323g00002	812	MobiDBLite	consensus disorder prediction	55	73	-	-
	Stsc30323g00002	812	MobiDBLite	consensus disorder prediction	202	238	-	-
	Stsc30323g00002	812	PANTHER	SERINE/THREONINE-PROTEIN KINASE TAO	227	556	-	-
	Stsc30323g00002	812	CDD	STKc_MAP4K3_like	243	498	-	-
	Stsc30323g00002	812	Pfam	Protein kinase domain	244	498	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30323g00002	812	SMART	serkin_6	244	498	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30323g00002	812	SUPERFAMILY	Protein kinase-like (PK-like)	241	499	IPR011009	-
	Stsc30323g00002	812	ProSitePatterns	Protein kinases ATP-binding region signature.	250	273	IPR017441	GO:0005524
	Stsc30323g00002	812	MobiDBLite	consensus disorder prediction	207	237	-	-
	Stsc30323g00002	812	ProSiteProfiles	Protein kinase domain profile.	244	498	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30323g00002	812	MobiDBLite	consensus disorder prediction	1	188	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30323g00002	Stsc-Chr30323	10506	22827	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30323g00002	1	812	MAP Kinase Kinase Kinase Kinase	AT1G69220	59.883	0.0	872

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-Pl	Stsc30323g00002		Pkinase	3.6e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30323g00002	-		-	gmx:100804995	1210.67