Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30322g00005 ATGGAAATGGGTTCGAGTCCCCGCACCGTTGAAGAAATCTTCAAGGATTACTCTTCTCGCAGAACCGCCATCGTTCGCGCTTTAACTCAAGATGTTGATGAATTTTATGGTCTCTGCGATCCAGAAAAGGAGAACTTGTGCCTTTATGGACATCCAAATGAGTCCTGGGAAGTGACCCTGCCAGCTGAGGAAGTTCCGCCGGAGCTTCCAGAGCCGGCTCTGGGAATCAATTTTGCTAGAGATGGCATGAACCGCAGGGACTGGCTTTCTCTTGTTGCTGTGCACAGTGATTCGTGGTTGCTCTCAGTTGCCTTTTATCTTGGAGCCCGACTTAACCGCAATGAGAGGAAGCGTTTGTTTAGCTTGATCAATGATCTTCCAACTGTTTTTGAAGTTGTAACTGAAAGGAAACCAGTAAAGGACAAGCCAACTGCAGACAGTGGAAGCAAATCGCGGGGAAGCACTAAGAGATCGAGTGACGGGCAAGTCAAAAGCAATCCAAAGTTCGATGAGGGTTATGAGGAGGAAGATGACGAGCACAGTGAAACTCTCTGCGGAAGCTGCGGCGGAAACTACAATGCGGATGAATTTTGGATTGGGTGTGACATATGCGAGAGGTGGTTCCACGGAAAGTGTGTGAAGATCACACCGGCGAAGGCTGAGAGCATAAAGCAATACAAATGCCCATCATGCATGAGAAGGGNNNNNNNNNNAGCCAAGAAAATGCAACATGTGAAAGTGAATAATAATGCTGAGTTGATGCTGACAAAGATACTGTAA 780 0.4667 MEMGSSPRTVEEIFKDYSSRRTAIVRALTQDVDEFYGLCDPEKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPVKDKPTADSGSKSRGSTKRSSDGQVKSNPKFDEGYEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCMRRXXXXAKKMQHVKVNNNAELMLTKIL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30322g00005 259 MobiDBLite consensus disorder prediction 148 162 - -
Stsc30322g00005 259 SUPERFAMILY FYVE/PHD zinc finger 173 240 IPR011011 -
Stsc30322g00005 259 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Stsc30322g00005 259 SMART PHD_3 184 232 IPR001965 -
Stsc30322g00005 259 PANTHER CPG BINDING PROTEIN 6 234 IPR045104 GO:0006355|GO:0042393
Stsc30322g00005 259 Pfam PHD-finger 185 233 IPR019787 -
Stsc30322g00005 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 232 IPR013083 -
Stsc30322g00005 259 CDD PHD_AL_plant 184 234 IPR044104 -
Stsc30322g00005 259 ProSitePatterns Zinc finger PHD-type signature. 185 231 IPR019786 -
Stsc30322g00005 259 ProSiteProfiles Zinc finger PHD-type profile. 182 234 IPR019787 -
Stsc30322g00005 259 MobiDBLite consensus disorder prediction 140 173 - -
Stsc30322g00005 259 FunFam PHD finger alfin-like protein 177 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30322g00005 Stsc-Chr30322 38869 43129 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30322g00005 5 231 Alfin-like Transcription Factor Family AT5G05610 79.476 5.00e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Stsc30322g00005 Alfin 4.4e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30322g00005 K26274 - gmx:100793126 452.21