Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30322g00004 ATGGGTGTAGACTACTACAAAATTCTACAGGTAGATCGAGGTGCGAAAGATGATGATCTCAAGAAAGCGTATCGGAAGCTTGCAATGAAGTGGCACCCTGACAAGAACCCTAACAACAAGAAGGAAGCTGAGGCCAAATTCAAGCAAATCTCTGAAGCCTATGATGTGTTGAGTGATCCACAAAAACGGGCAGTGTATGATCAGTATGGAGAGGAGGGATTGAAGGGGCAGGTGCNNNNNNNNNNGGGTGGATTTTCCAGTGCAGGTGACGGGCCAACAACGTTCCGGTTCAACCCCAGAAGTGCTGATGATATATTCTCAGAGTTTTTTGGGTTTTCAAGCCCCTTTGGTGGAATGGGCGGCGATATGGGTGGCCGTGCAGGTGCATCTGGATTTCCCAGGGGCATGTTTGGTGACGATATCTTCACTTCATTTAGGCATGCTGCTGGAGAAGGCTCTACCAATATGCCAAGGAAAAGTGCACCGATCGAGAGAACATTGCAATGCAGTTTGGAGGATTTGTACAAAGGGACCACCAAGAAAATGAAGATCTCCAGGGATGTTACGGATGCCAGCGGGAGAGCCACTACAGTAGAGGAAATTCTGACAATTGAGATCAAGCCAGGTTGGAAGAAAGGAACGAAAATAACTTTTCCGGAGAAGGGGAATGAACAGCGAGGGGTTATACCTGCTGACCTAGTTTTCATTATTGACGAGAAGCCTCATAGCCTCTTCAAGAGAGATGGAAATGATCTTGTCGTCACGCAGAAGATTTCTCTAGTAGAAGCTCTCACGGGTTACACGGCGCAACTGACAACCCTTGATGGGCGAAGCATCTCGGTACCCATCAACTCCATCATTAGTCCGTCATATGAAGAAGTCATCAAAGGCGAGGGTATGCCAATTCCGAAAGAACCTTCCAAAAGGGGGAACTTGAGAATCAAGTTCAATATCAAGTTTCCGTCGAGGCTTACATCGGACCAAAAAGCCGGCATTAAGCGGTTACTGACCTCTCCATAA 1020 0.4686 MGVDYYKILQVDRGAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQVXXXXGGFSSAGDGPTTFRFNPRSADDIFSEFFGFSSPFGGMGGDMGGRAGASGFPRGMFGDDIFTSFRHAAGEGSTNMPRKSAPIERTLQCSLEDLYKGTTKKMKISRDVTDASGRATTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTAQLTTLDGRSISVPINSIISPSYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSRLTSDQKAGIKRLLTSP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30322g00004 339 FunFam Dnaj homolog subfamily b member 159 240 - -
Stsc30322g00004 339 Gene3D - 242 322 - -
Stsc30322g00004 339 Gene3D - 162 240 - -
Stsc30322g00004 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 245 330 IPR008971 GO:0006457|GO:0051082
Stsc30322g00004 339 CDD DnaJ 4 59 IPR001623 -
Stsc30322g00004 339 PRINTS DnaJ domain signature 24 39 IPR001623 -
Stsc30322g00004 339 PRINTS DnaJ domain signature 42 62 IPR001623 -
Stsc30322g00004 339 PRINTS DnaJ domain signature 62 81 IPR001623 -
Stsc30322g00004 339 PRINTS DnaJ domain signature 6 24 IPR001623 -
Stsc30322g00004 339 SUPERFAMILY Chaperone J-domain 3 124 IPR036869 -
Stsc30322g00004 339 Gene3D DnaJ domain 3 120 IPR036869 -
Stsc30322g00004 339 Pfam DnaJ domain 4 67 IPR001623 -
Stsc30322g00004 339 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 336 - -
Stsc30322g00004 339 SMART dnaj_3 3 62 IPR001623 -
Stsc30322g00004 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 163 242 IPR008971 GO:0006457|GO:0051082
Stsc30322g00004 339 CDD DnaJ_C 161 324 - -
Stsc30322g00004 339 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Stsc30322g00004 339 FunFam DnaJ subfamily B member 13 3 120 - -
Stsc30322g00004 339 FunFam DnaJ subfamily B member 13 242 322 - -
Stsc30322g00004 339 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Stsc30322g00004 339 Pfam DnaJ C terminal domain 163 321 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30322g00004 Stsc-Chr30322 33313 36724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30322g00004 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 1.46e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30322g00004 K09510 - qsu:112019781 531.176