Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30321g00014 ATGAGTTTTGGAGGGTTTCTAGACAGCAATTCCGGTGGTGGCGACGACGGTAGCGGCGGCGGGGTGAGAAACATAGTAGAAATTCCATATAGCAACGGTGGTGGTGGTGGTGGTGGTGGCACTACCAAGAACAACATCAACAACGATAACAACAACAATAATAATAACAATAATAGTAGAACAATGCCCTCTGGTGCAATCTCACAGCCTCGGCTTTTGACAACTCCAACTTTGGCCAAATCAATGTTCAACTCACCTGGCCTCTCTCTAGCACTTCAGCAAAGTAATAATCTTGATGGACAAGGAGGGGATGTGATGAATAACAACAACATTATTATTATGGGTGAGAACAACAATAATGGAGGAGGATTGAGAAGGAGCAGAGAAGAAGAACATGAAAGCAGATCTGGAAGTGATAACATGGATGGTGCCTCCGGTGATGAACTAGATGCTGATGCTGCCGACAACAGCAATCCCACCAAAAGGAAAAAAAGATATCACCGACACACTCCTCAGCAAATTCAAGAGCTTGAATCGTTGTTTAAGGAGTGTCCTCACCCTGACGAGAAACAAAGGCTAGAACTTAGTAAAAGGCTTTGCTTGGAAACAAGGCAGGTGAAGTTTTGGTTCCAAAATCGGAGAACCCAAATGAAGACTCAATTGGAGCGCCATGAGAACACACTCCTAAGGCAAGAGAATGACAAACTTAGAGCTGAGAACATGTCGATTAGAGATGCAATGAGGAACCCCATGTGCTCAAATTGTGGTGGTCCAGCCATAATTGGTGAGCTCTCACTTGAGGAGCAACACCTTAGAATTGAGAATGCAAGGCTAAAGGATGAGTTAGACCGGGTTTGCGCCCTCGCCGGGAAGTTCTTGGGCCGGCCCATTTCGTCGATGGGCGGGCCTCCTCCGTTGCCGAATTCAAGTTTGGAACTTGGTGTTGGCAACAACAACAATGGCTATGGTTGCAATTTGAGCATAAATGTGCCTAATAATAGCTTGCCTTTGGGGGCTGATTTTGGTGTGAATTTGTCTAGTAGTCCTTTGGGTATGGTTTCGATGACTCGGCCGCAGCCGAGCGCGGTGGTTGGCGGATTGGATAGGTCAATTGAGAGGTCAATGTTGTTGGAGCTTGGTTTGGCTGCCATGGATGAGTTGGTGAAGATGGCACAAAGTTGTGAGCCTCTTTGGATAAGGAGTATGGAAATGGGGGGAAGGGAAGTGCTTAACCATGAGGAGTATATTAGGACATTCCCTAATCCTTGCATTGCTTTGAGGCCTAATGCCTTTGTCTCTGAGGCTTCAAGGGAAACTGGCCTTGTCATCATAAATAGCTTGGCCCTTGTTGAGACTTTAATGGATGCGAATCGATGGGCAGAGATGTTTCCTTGTATGATTGCAAGAACTTCAACCACTGAAGTGATATCAAATGGAATAAACGGCAGCAGAAATGGTGCACTTCAACTAATGCATGCGGAGCTTCAAGTTCTATCACCATTGGTGCCAGTGAGAGAGGTGAATTTCCTTCGATTTTGCAAGCAACATGCAGAAGGGGTGTGGGCAGTGGTGGATGTCTCCATTGATGCAATCAGAGAAACTTCTTCTGGCGGTGCCCCAACTTTTGTTAATTGCAGAAGACTCCCTTCTGGCTGCATTGTTCAAGATATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAACATGCAGAATACGAGGAAAGGGAAGTTCATCAGTTATACAGAGCCTTGTTGAGCTCCGGCATGGCCTTCGGCGCCCAGCGCTGGATCGCCACCCTACAACGCCAGTGCGAGTGCCTCGCCATCCTCATGTCTTCTACTCAGCCTTCCAGAGACCATTCAGCAATAACTGCAAGTGGTAGGCGTAGCATGCTAAAGCTGGCACAGAGGATGACCAACAACTTCTGCGCCGGAGTGTGCGCCTCCACCGTGCACAAGTGGAACAAGCTCCACAACGCCGGCAACACCGTCGACGAGGATGTTCGGGTAATGACAAGGAAGAGCGTTGACGACCCCGGGGAGCCGCCCGGGATCGTCCTCAGCGCTGCCACTTCAGTGTGGCTCCCAGTCTCCCCGCAGAGGCTGTTCGACTTCCTACGCGACGAGAGGCTGAGGAGCGAGTGGGACATACTATCCAATGGTGGGCCCATGCAAGAGATGGCTCACATTGCTAAGGGACAGGATCATGGCAACTGCGTCTCACTCCTTAGAGCCAGTGCGATAAATTCAAATCAAAGTAGCATGTTGATACTACAAGAGACATGCATAGATGCTGCAGGCTCGCTTGTGGTGTACGCGCCGGTGGATATTCCGGCAATGCATGTGGTGATGAACGGTGGTGATTCTGCCTACGTGGCATTATTACCTTCTGGGTTTGCAATTGTTCCTGATGGGCCTGGGCCTCGTGGGGCCCAAAATGGGGGCGCCGATGTGAATGGTGGTGATGACCTTGGTGGTGGGGCGCGCGTGGGTGGGTCCCTTTTAACGGTGGCCTTTCAGATTCTTGTGAATAGTCTCCCTACGGCGAAGCTCACGGTAGAATCGGTGGAAACCGTGAACAACCTCATTACATGCACAGTTCAAAAGATAAAAGCAGCACTACGATGTGAAAGTTGA 2637 0.4922 MSFGGFLDSNSGGGDDGSGGGVRNIVEIPYSNGGGGGGGGTTKNNINNDNNNNNNNNNSRTMPSGAISQPRLLTTPTLAKSMFNSPGLSLALQQSNNLDGQGGDVMNNNNIIIMGENNNNGGGLRRSREEEHESRSGSDNMDGASGDELDADAADNSNPTKRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGELSLEEQHLRIENARLKDELDRVCALAGKFLGRPISSMGGPPPLPNSSLELGVGNNNNGYGCNLSINVPNNSLPLGADFGVNLSSSPLGMVSMTRPQPSAVVGGLDRSIERSMLLELGLAAMDELVKMAQSCEPLWIRSMEMGGREVLNHEEYIRTFPNPCIALRPNAFVSEASRETGLVIINSLALVETLMDANRWAEMFPCMIARTSTTEVISNGINGSRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDAIRETSSGGAPTFVNCRRLPSGCIVQDMPNGYSKVTWVEHAEYEEREVHQLYRALLSSGMAFGAQRWIATLQRQCECLAILMSSTQPSRDHSAITASGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLHNAGNTVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINSNQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGPRGAQNGGADVNGGDDLGGGARVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLITCTVQKIKAALRCES 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30321g00014 878 MobiDBLite consensus disorder prediction 37 68 - -
Stsc30321g00014 878 Gene3D - 150 236 - -
Stsc30321g00014 878 ProSitePatterns 'Homeobox' domain signature. 195 218 IPR017970 GO:0000981|GO:0006355
Stsc30321g00014 878 CDD START_ArGLABRA2_like 373 605 - -
Stsc30321g00014 878 FunFam Homeobox-leucine zipper protein HDG1 149 236 - -
Stsc30321g00014 878 Coils Coil 214 246 - -
Stsc30321g00014 878 MobiDBLite consensus disorder prediction 123 138 - -
Stsc30321g00014 878 Pfam START domain 381 606 IPR002913 GO:0008289
Stsc30321g00014 878 SUPERFAMILY Bet v1-like 371 606 - -
Stsc30321g00014 878 CDD homeodomain 162 220 IPR001356 GO:0003677
Stsc30321g00014 878 MobiDBLite consensus disorder prediction 1 68 - -
Stsc30321g00014 878 Pfam Homeodomain 163 218 IPR001356 GO:0003677
Stsc30321g00014 878 ProSiteProfiles 'Homeobox' domain profile. 160 220 IPR001356 GO:0003677
Stsc30321g00014 878 Coils Coil 261 281 - -
Stsc30321g00014 878 SMART START_1 378 606 IPR002913 GO:0008289
Stsc30321g00014 878 SUPERFAMILY Bet v1-like 634 871 - -
Stsc30321g00014 878 MobiDBLite consensus disorder prediction 116 170 - -
Stsc30321g00014 878 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 161 874 IPR042160 -
Stsc30321g00014 878 SUPERFAMILY Homeodomain-like 146 220 IPR009057 -
Stsc30321g00014 878 FunFam Homeobox-leucine zipper protein GLABRA 2 378 605 - -
Stsc30321g00014 878 SMART HOX_1 161 224 IPR001356 GO:0003677
Stsc30321g00014 878 ProSiteProfiles START domain profile. 369 609 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30321g00014 Stsc-Chr30321 95691 103602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30321g00014 1 878 Homeobox Transcription Factor Family AT3G61150 62.116 0.0 1016
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc30321g00014 START 7.8e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30321g00014 K09338 - tcc:18614208 1237.63