Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30320g00012 ATGGATTCATCTGTTTCCCAAGTAGTAGTTGATTGTGATGACCAATTCTCAAGGTCTTTTCAAAGTGTTGAGGCAACACATTCTGTTCATAAGAAGTCTTCATGGCACAAACTTCTTGCCTCCATTGGTGCCCATGAAATTTTCTCAATAGAGACATGGAAGGCAGCATTTACTGAGTTAGTTGCAACTGCTTCTCTAATCATCACACTGACAACATCAATCATAGCATGCTTGGAGTCACATGAAGTTGATCCAAAGCTTCTTATCCCCATTGCAGTGTTCATCATAGCCTTCTTGTTCCTCATAGTCACAATTCCACTCTCTGGGGGTCACATGAGTCCTGTTTTCACATTCATAGCAGCATTAAAGGGTGTTGTCACTCTAACACGTGCACTAATTTATGTCATAGCACAATGCATTGGTTCCATAATTGGTTTCATCATGCTAAAATGTGTTATGGACCCAAAATTGGAAGACAAATACTCATTAGGAGGGTGTTTAATTGGTGATGATCATAATGGACTAGGATCAAAGCCACAAGTTGCATTGTTATTGGAATTTTCATGCACATTTTTGGTGCTGTTTATTGGTATTACTTTGGGATTTGATAAGAGAAGGTCCAAGGAATTAGGGTTACCTATGGTGTGTGTTGTGATTGCTGGGGGAATGGCATTGGCAGTGTTTGTGTCTATAACTGTTACTGGCCAACCGGGCTATGCAGGTGTTGGGCTTAACCCAGCAAGGTGTTTGGGCCCAGCTTTGCTAAGAGGTGGGTCATTGTGGAATGGACATTGGGTTTTCTGGGTTGGGCCTTTCTTGGCCTGTATAACATATTATGGGGTGTCTATTAATTTACCAAAGGATAGTTTGCCTTTGGAAGATGGAGAATATGATGTGTTGAATTCGGCTTTGGGCCATAATAGGAGTGCTGTCTCAAATGATCTTCAAGTTTGA 954 0.4119 MDSSVSQVVVDCDDQFSRSFQSVEATHSVHKKSSWHKLLASIGAHEIFSIETWKAAFTELVATASLIITLTTSIIACLESHEVDPKLLIPIAVFIIAFLFLIVTIPLSGGHMSPVFTFIAALKGVVTLTRALIYVIAQCIGSIIGFIMLKCVMDPKLEDKYSLGGCLIGDDHNGLGSKPQVALLLEFSCTFLVLFIGITLGFDKRRSKELGLPMVCVVIAGGMALAVFVSITVTGQPGYAGVGLNPARCLGPALLRGGSLWNGHWVFWVGPFLACITYYGVSINLPKDSLPLEDGEYDVLNSALGHNRSAVSNDLQV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30320g00012 317 Pfam Major intrinsic protein 48 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30320g00012 317 PRINTS Major intrinsic protein family signature 226 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30320g00012 317 PRINTS Major intrinsic protein family signature 265 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30320g00012 317 PRINTS Major intrinsic protein family signature 93 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30320g00012 317 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30320g00012 317 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30320g00012 317 PANTHER AQUAPORIN-LIKE 18 302 - -
Stsc30320g00012 317 Gene3D Glycerol uptake facilitator protein. 12 286 IPR023271 -
Stsc30320g00012 317 SUPERFAMILY Aquaporin-like 50 277 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30320g00012 Stsc-Chr30320 89697 91201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30320g00012 46 276 Major Intrinsic Protein MIP AT4G35100 31.799 5.18e-21 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30320g00012 K09866 - gmx:100797262 410.223