Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30320g00003 ATGGCTTTCTTCTTAGTTTCCTTTCTCTCTCTCTTCCTCTTCCTTTCTTCATCAGCCACCGCTTGTGATCGTTGTCTCCACCAATCCAAAGCTTCCTTCTTCTCCAAAGCCTCTGCTCTCTCAGCTGGAGCATGTGATTATGGTGAATTAGCACTATCATTGAGTGCTGGAAACCTTGCAGCTGCTGTTCCTTCAATCTTCAAAGACGGTGCTTCTTGTGGTGCCTGCTTTCAGATTAGATGCAAGGATCCTAAAGTGTGCTCAAAATCAGGGATCAGAGTGGTGGTTACTGATCTTAACAGAGATAACAAAACTGATTTTGTTCTTAGCAGCAGAGCCTTTCAGTCTCTGGCTCTCAATGGAAAGGGTCAATACCTTCTCAAGCTTGGCATTCTCGACATTGAATACAAGAGGGTACCATGTGAGTACAAGAACAAGAACCTAGCTGTTCGCGTTGAAGAATCAAGCAAGAAGCCTAATTACTTGGCCATTAAATTCTTGTATCAAGGTGGTCAAACTGACATAGTAGCCGTTGACGTAGCCAAGGTTGGTTCATCCAACTGGAGTTTCTTGACCAGAAACCATGGTGCAGTGTGGGACACAAGCAGGGTTCCAGAAGGGCCATTGCAACTGAGGTTGGTTGTAACTGCTGGTTTTGATGGGAAGTGGATTTGGGCACAGAAAAAGGTTCTTCCTGCTGATTGGAAAAATGGTGTCATCTATGATACTGGTGTTCAAATCACTGACATTGCTCAAGAGGGTTGTGCCACTTGTGATGATGGTTCTTGGCCATGA 795 0.4478 MAFFLVSFLSLFLFLSSSATACDRCLHQSKASFFSKASALSAGACDYGELALSLSAGNLAAAVPSIFKDGASCGACFQIRCKDPKVCSKSGIRVVVTDLNRDNKTDFVLSSRAFQSLALNGKGQYLLKLGILDIEYKRVPCEYKNKNLAVRVEESSKKPNYLAIKFLYQGGQTDIVAVDVAKVGSSNWSFLTRNHGAVWDTSRVPEGPLQLRLVVTAGFDGKWIWAQKKVLPADWKNGVIYDTGVQITDIAQEGCATCDDGSWP 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30320g00003 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 243 IPR007117 -
Stsc30320g00003 264 FunFam Expansin-like A2 143 248 - -
Stsc30320g00003 264 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Stsc30320g00003 264 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Stsc30320g00003 264 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Stsc30320g00003 264 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576
Stsc30320g00003 264 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Stsc30320g00003 264 Gene3D - 15 142 IPR036908 -
Stsc30320g00003 264 PANTHER EXPANSIN-B3 13 246 - -
Stsc30320g00003 264 SUPERFAMILY Barwin-like endoglucanases 12 145 IPR036908 -
Stsc30320g00003 264 SUPERFAMILY PHL pollen allergen 146 242 IPR036749 -
Stsc30320g00003 264 PRINTS Major pollen allergen Lol pI signature 118 133 IPR005795 GO:0005576|GO:0019953
Stsc30320g00003 264 PRINTS Major pollen allergen Lol pI signature 151 166 IPR005795 GO:0005576|GO:0019953
Stsc30320g00003 264 PRINTS Major pollen allergen Lol pI signature 81 91 IPR005795 GO:0005576|GO:0019953
Stsc30320g00003 264 PRINTS Major pollen allergen Lol pI signature 167 182 IPR005795 GO:0005576|GO:0019953
Stsc30320g00003 264 PRINTS Major pollen allergen Lol pI signature 219 236 IPR005795 GO:0005576|GO:0019953
Stsc30320g00003 264 PRINTS Major pollen allergen Lol pI signature 61 72 IPR005795 GO:0005576|GO:0019953
Stsc30320g00003 264 Pfam Expansin C-terminal domain 149 232 IPR007117 -
Stsc30320g00003 264 Gene3D - 143 248 IPR036749 -
Stsc30320g00003 264 Pfam Lytic transglycolase 61 124 IPR009009 -
Stsc30320g00003 264 CDD DPBB_EXLA_N 19 143 - -
Stsc30320g00003 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 146 IPR007112 -
Stsc30320g00003 264 SMART dpbb_1 60 136 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30320g00003 Stsc-Chr30320 18684 20644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30320g00003 1 258 Expansin Gene Family AT3G45960 64.231 4.49e-112 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30320g00003 - - cave:132192007 407.142