Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30320g00001 ATGGCTTCTTCAACAATAGAAGGTGATGTTACACTTCCAGGGTTCAGGTTTCACCCTACTGAAGAAGAACTACTTGATTTCTATCTCAAGAATATGGTCCTCGGAAAGAAGCTTCGTTTCGATGTCATAGGCTTCCTCAACATCTATCACCATAATCCTTGGGACTTGCCAGGGTTGGCGAAGGTGGGGGAGAGGGAATGGTACTTCTTCGTGCCCAGGGACAGAAAGCATGGCACCGGGGGAAGGCCTAACCGAACCACGGAGAGAGGGTTCTGGAAAGCCACCGGTTCGGACCGGAAGATCGTTACGTTGTCGGATCCGAAACGCATAATCGGATTGAGGAAGACACTGGTTTTCTACGAGGGAAGAGCTCCACGTGGATCTAAGACTGATTGGGTCATGAATGAGTACCGTTTACCTGATAATTGCCACTTGCCTAAGGACATAGTGCTATGCAAGATATATAGGAAGGCGACTTCATTGAAGGTGTTGGAGCAAAGAGCAGCAATAGAGGAAGAGATGAAGCAGATGGTAGGTTCCCCTGAATCCACACCATCCTCCACAGACACCATGTCCTACGAAGAACAACAACAACAGAATCTGCAGTTGTTACCACCACAACATGTTGTTCTGAAGAAAGAGGTTGAAGCAGAACATGAAGAAGAAAAGATGGTACATGTTACAGTGGCAACAAAGCAAGAAAACAACACCACAGCAAAGAACACAAGTAGTCTTCAATTGCCTTTTGGGAAGGACAAGATCCCAGAGCTTCAGATGCCTATGATGATCACTGATTGGACCCAAGACACATTTTGGGCTCAATTGAATAGTCCATGGCTTCAAAACTATACTTACTCCAACATATTAAACTTCTAA 876 0.4555 MASSTIEGDVTLPGFRFHPTEEELLDFYLKNMVLGKKLRFDVIGFLNIYHHNPWDLPGLAKVGEREWYFFVPRDRKHGTGGRPNRTTERGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPRGSKTDWVMNEYRLPDNCHLPKDIVLCKIYRKATSLKVLEQRAAIEEEMKQMVGSPESTPSSTDTMSYEEQQQQNLQLLPPQHVVLKKEVEAEHEEEKMVHVTVATKQENNTTAKNTSSLQLPFGKDKIPELQMPMMITDWTQDTFWAQLNSPWLQNYTYSNILNF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30320g00001 291 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 232 - -
Stsc30320g00001 291 FunFam NAC domain-containing protein 67-like 20 161 - -
Stsc30320g00001 291 Gene3D NAC domain 20 161 IPR036093 GO:0003677|GO:0006355
Stsc30320g00001 291 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
Stsc30320g00001 291 SUPERFAMILY NAC domain 10 157 IPR036093 GO:0003677|GO:0006355
Stsc30320g00001 291 ProSiteProfiles NAC domain profile. 11 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30320g00001 Stsc-Chr30320 4383 6728 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30320g00001 9 284 NAC Transcription Factor Family AT2G17040 60.289 2.95e-119 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc30320g00001 NAM 1.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30320g00001 - - adu:107477264 527.324