Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30317g00030 ATGGAAAGTGTTCAATTAGAACATGAAAACGTGACTCAATTGGTCTTAGTTAGTCTTCGGGACGGAGTGGAAGAAGGGCGGAGACTCTCGAACGAGGAAAAGGATCCCTTCGAAAGAATTGAACGAGGAGCCAGGGACAGGAAGGGTGACTTATCTGTCGACTTTTCCACTATCAACCCCAAAAAACCCAACTCTGCCTTACGTAAAGTTGCCAGAGTACGATTAACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTATTAGTAAGAGGAGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCGCATTATTCGAGGAGCCCTAGATGCTGTCGCAGTAAAGAATCGTCAACAAGGGCGTTCTAGTACTGCAGAAAAAAGAACTGCAAAATCCGATCCAATTTTTCGTAATCGATTAGTTAACATGGTGGTTAACCGTATTATGAAAGACGGAAAAAAATCATTGGCTTATCAAATTCTCTATCGAGCCGTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATTGGTTTTACGTCAAGCAATACGTAGAGTAACTCCCAATATAGGAGTAAAAACAAGACGTAATAAAAAAGGATCGACGCGGAAAGTTCCGATTGAAATAGGATCTAAACAAGGAAGAGCACTTGCCATTCGTTGGTTATTAGAAGCATCCCAAAAGCGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTAGATGCTGCCAAAGGGGGTGGGGGTGCCATACGCAAAAAGGAAGCGACTCATAGAATGGCAGAGGCAAATAGAGCTCTTGCACATTTTCGTTAA 858 0.4149 MESVQLEHENVTQLVLVSLRDGVEEGRRLSNEEKDPFERIERGARDRKGDLSVDFSTINPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYRIIRGALDAVAVKNRQQGRSSTAEKRTAKSDPIFRNRLVNMVVNRIMKDGKKSLAYQILYRAVKKIQQKTETNPLLVLRQAIRRVTPNIGVKTRRNKKGSTRKVPIEIGSKQGRALAIRWLLEASQKRPGRNMAFKLSSELVDAAKGGGGAIRKKEATHRMAEANRALAHFR 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30317g00030 285 Pfam Ribosomal protein S7p/S5e 131 279 IPR023798 -
Stsc30317g00030 285 Coils Coil 267 285 - -
Stsc30317g00030 285 CDD Ribosomal_S12 57 128 IPR005679 GO:0003735|GO:0006412|GO:0015935
Stsc30317g00030 285 NCBIfam 30S ribosomal protein S12 51 140 IPR005679 GO:0003735|GO:0006412|GO:0015935
Stsc30317g00030 285 PRINTS Ribosomal protein S12 signature 60 75 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00030 285 PRINTS Ribosomal protein S12 signature 112 128 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00030 285 PRINTS Ribosomal protein S12 signature 95 112 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00030 285 PRINTS Ribosomal protein S12 signature 128 140 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00030 285 PRINTS Ribosomal protein S12 signature 76 95 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00030 285 PANTHER RIBOSOMAL PROTEIN S7 100 279 IPR000235 GO:0006412
Stsc30317g00030 285 Gene3D Ribosomal protein S7 domain 142 285 IPR036823 -
Stsc30317g00030 285 SUPERFAMILY Nucleic acid-binding proteins 53 140 IPR012340 -
Stsc30317g00030 285 ProSitePatterns Ribosomal protein S12 signature. 61 68 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00030 285 FunFam 30S ribosomal protein S7 130 285 - -
Stsc30317g00030 285 ProSitePatterns Ribosomal protein S7 signature. 149 175 IPR020606 GO:0003723|GO:0003735|GO:0006412
Stsc30317g00030 285 NCBIfam 30S ribosomal protein S7 132 285 IPR005717 GO:0003735|GO:0006412|GO:0015935
Stsc30317g00030 285 CDD uS7_Chloroplast 138 284 - -
Stsc30317g00030 285 Gene3D - 15 141 IPR012340 -
Stsc30317g00030 285 Pfam Ribosomal protein S12/S23 46 132 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00030 285 Hamap 30S ribosomal protein S7 [rpsG]. 130 285 IPR005717 GO:0003735|GO:0006412|GO:0015935
Stsc30317g00030 285 SUPERFAMILY Ribosomal protein S7 133 279 IPR036823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30317g00030 Stsc-Chr30317 89137 90668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30317g00030 29 117 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 39.175 6.00e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30317g00030 K02992 - osa:3131444 291.967