Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30317g00026 ATGGACGGCACCGTTGTGGTAAAGGTCGTAATTCCAGAGGAATCATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGCCTATACCGTAAAATCGATTTTCGACGGAATCAAAAAGACATATCTGGTAGAATCAGGGGCTATAATTGGAGATACTATTGTTTCTGGTACAAAAGTTCCTATATCAATGGGAAATGCCCTACCTTTGAGTGCGAGATATGGTAATATGGAGAAGACAAAATTGTTTGAAGCACGCACAGAACCGGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGGATTTGGATTCCTTTCCTATATATCCACTCATGTGGTACTTCATCATACGATTCATATAAGATCCATCTGTCTAGAGATCGTCATATACATCTAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTTTGAGAGAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACGTGGAAGGGGTGGGCAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAAGGTAAATCGGCCACTTTAAGATTACCATCTGGGGAGGTCCGTTTGGTATCCCAAAACTGCTTAGCAACAGTCGGACAAGTGGGTAATGTTGGGGTGAACCAAAAAAGTTTGGGTAGAGCCGGGTCTAAGTGTTGGCTAGGTAAACGCCCCGTAGTAAGAGGGGTAGTTATGAACCCTGTGGACCACCCCCATGGGGGCGGTGAAGGGAAAGCCCCCATTGGTAGAAAAAAACCCACAACCCCTTGGGGTTATCCTGCGCTTGGAAGAAGAACTAGGAAAAGGAAAAAATATAGTGATAGTTTTATTCTTCGTCGCCGTAAGTAA 897 0.4482 MDGTVVVKVVIPEESLPQGIEGEVISAYTVKSIFDGIKKTYLVESGAIIGDTIVSGTKVPISMGNALPLSARYGNMEKTKLFEARTEPEAPLVSKRGGRIWIPFLYIHSCGTSSYDSYKIHLSRDRHIHLESRMLWKKLVQFGKGFFERKEESTSTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRRK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30317g00026 298 SUPERFAMILY Translation proteins SH3-like domain 157 296 IPR008991 -
Stsc30317g00026 298 SMART Ribosomal_L2_C_2 157 276 IPR022669 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00026 298 MobiDBLite consensus disorder prediction 250 298 - -
Stsc30317g00026 298 FunFam 50S ribosomal protein L2, chloroplastic 150 219 - -
Stsc30317g00026 298 FunFam 50S ribosomal protein L2 219 298 - -
Stsc30317g00026 298 NCBIfam 50S ribosomal protein L2 157 298 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Stsc30317g00026 298 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 22 73 IPR002171 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00026 298 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 148 298 IPR002171 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00026 298 Gene3D Ribosomal protein L2, domain 3 220 298 IPR014726 -
Stsc30317g00026 298 Pfam Ribosomal Proteins L2, C-terminal domain 157 274 IPR022669 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00026 298 ProSitePatterns Ribosomal protein L2 signature. 241 252 IPR022671 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00026 298 PANTHER RIBOSOMAL PROTEIN L2 38 297 IPR002171 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00026 298 Gene3D - 55 219 IPR014722 -
Stsc30317g00026 298 MobiDBLite consensus disorder prediction 279 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30317g00026 Stsc-Chr30317 82378 83768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30317g00026 157 259 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 43.860 9.89e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30317g00026 K02886 - ghi:121226617 276.174