Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30317g00024 ATGAAGGGAAAATCCTACCGAGGCAATTGTATTTGTTTTGGTAGATATGCTCTTCAAGCACTTGAACCCACTTGGATTACGGCGAGGCAGATAGAAGCAGGACGAAGAGCAATGACACGATATGCACGTCGTGGTGGAAAAATCTGGGTACGTATATTTCCCGACAAACCGGTTACAATAAGACCGACCGAAACACGTATGGGTTCGGGAAAGGGATCCCCCGAATATTGGGTAGCCGTTGTTAAACCAGGTCGAATACTTTATGAAATGGGCGGAGTATCCGAAACTGTAGCTAGAGTAGCTATTTCCATAGCTGCCAGCAAAATGCCCATACGAAATAACAGTGGAGCTCGAAAATTGATGTGTATTCGAGTCATAGGAGCTGCTAGTAATCAGCGATATGCTCGTATTGGTGATGTTATTGTTGCTGTAATCAAAGACGCAGTGCCCCAAATGCCTCTAGAAAGATCCGAAGTAATTCGAGCTGTAATTGTACGTACATGTAAAGAGTTCAAATGCGAAGACGGTATAATAATACGCTATGACGACAATGCAGCGGTTATCATTGATCAAAAAGGAAATCCAAAAGGAACTCGCGTTTTTGGCGCGATCGCCGAGGAATTGAGAGAATTGAATTTTACTAAAATAGTTTCATTAGCTCCTGAAGTATTATAA 675 0.4252 MKGKSYRGNCICFGRYALQALEPTWITARQIEAGRRAMTRYARRGGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVSETVARVAISIAASKMPIRNNSGARKLMCIRVIGAASNQRYARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30317g00024 224 FunFam 50S ribosomal protein L16 1 121 - -
Stsc30317g00024 224 CDD Ribosomal_L16_L10e 7 112 IPR016180 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00024 224 PANTHER 50S/60S RIBOSOMAL PROTEIN L16 1 112 IPR000114 GO:0003735|GO:0006412|GO:0019843
Stsc30317g00024 224 PRINTS Ribosomal protein L16 signature 26 37 IPR000114 GO:0003735|GO:0006412|GO:0019843
Stsc30317g00024 224 PRINTS Ribosomal protein L16 signature 42 71 IPR000114 GO:0003735|GO:0006412|GO:0019843
Stsc30317g00024 224 PRINTS Ribosomal protein L16 signature 72 101 IPR000114 GO:0003735|GO:0006412|GO:0019843
Stsc30317g00024 224 PRINTS Ribosomal protein L16 signature 8 20 IPR000114 GO:0003735|GO:0006412|GO:0019843
Stsc30317g00024 224 FunFam 50S ribosomal protein L14, chloroplastic 102 224 - -
Stsc30317g00024 224 Pfam Ribosomal protein L16p/L10e 1 112 IPR016180 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00024 224 ProSitePatterns Ribosomal protein L16 signature 2. 66 77 IPR020798 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00024 224 Hamap 50S ribosomal protein L14 [rplN]. 101 224 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00024 224 NCBIfam 50S ribosomal protein L16 1 111 IPR000114 GO:0003735|GO:0006412|GO:0019843
Stsc30317g00024 224 ProSitePatterns Ribosomal protein L14 signature. 162 188 IPR019972 -
Stsc30317g00024 224 NCBIfam 50S ribosomal protein L14 106 224 IPR005745 GO:0003735|GO:0006412|GO:0015934
Stsc30317g00024 224 SUPERFAMILY Ribosomal protein L16p/L10e 1 112 IPR036920 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00024 224 ProSitePatterns Ribosomal protein L16 signature 1. 43 54 IPR020798 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00024 224 SMART Ribosomal_L14_2 103 224 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00024 224 Pfam Ribosomal protein L14p/L23e 107 224 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00024 224 Gene3D Ribosomal protein L10e/L16 1 125 IPR036920 GO:0003735|GO:0005840|GO:0006412
Stsc30317g00024 224 SUPERFAMILY Ribosomal protein L14 107 224 IPR036853 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30317g00024 Stsc-Chr30317 78443 79289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30317g00024 91 224 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 31.884 8.73e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30317g00024 K02878 - osa:3131423 228.794