LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30317g00023	ATGACAGAAAAGAAAAATAGGAGAGAAAAAAAAAACCCGAGAGAAGCAAAAATTACTTTCGAGGGTTTAGTTATGGAAGCCCTACCCAACGGAATGTTCCGCGTTCGCCTAGAGAATGACACCATCATCCTGGGCTATATTTCAGGAAAGATCCGGTCTAGTTCTATACGAATACTGATGGGGGATAGGGTCAAAATTGAAGTAAGTCGTTATGATTCAAGCAAGGGGCGTATAATTTATAGACTTCCCCATAAGGATTCGAAGCGTACCGAAGACTCGAAGGATACCGAAGATTTGAAGGATACCAAAGATTCAAAGGGCGTGGACGAATTAGAGTCATTTGTTCCAATCCGAAGCATAAACAAAGACAGGGCTATACCAAAAATTGGTTCACGTAGGAAAGTACGTATTGGTTTGCGTAGGAATGCGCGTTTTAGTTTACGGAAGAGTGCACGTAGAATAACAAAAGGAGTTATTCATGTTCAAGCTAGTTTCAACAATACTATTATAACTGTTACAGATCCGCAAGGTCGGGTGGTTTTCTGGTCCTCCGCGGGTACTTGTGGATTCAAAAGCTCAAGAAAAGCATCACCCTATGCTGGTCAAAGAACAGCTGTAGATGCTATTCGTACAGTGGGTTTGCAACGAGCAGAAGTTATGGTAAAGGGTGCTGGTAGTGGAAGAGATGCCGCATTACGAGCCATTGCTAAAAGTGGTGTACGATTAAGTTGTATACGCGATGTAACACCTATGCCGCATAATGGGTGTCGACCTCCTAAAAAAAGACTCTATATGGTTCGAGAGGAGGTAGCAGGATCCACTCAAACACTACAGTGGAAGTGTGTTGAATCAAGAGTAGATAGTAAGCGTCTTTATTATGGTCGTTTCATTCTGTCCCCGCTTAGAAAAGGTCAAGCGGATACCGTTGGTATTGCCTTGCGAAGAGCTTTACTTGGAGAAACAGAAGGAACATGTATCACACATGCAAAATTTGGGAGCGTGCCGCACGAATATTCTACAATAGCAGGTATTGAAGAATCGGTACAAGAAATTTTACTAAATTTGAAAGAAATTGTATTGAGAAGTAATCTCTATGGAGTTAGAACCGCATCAATTTGCGTCAAAGGTCCTAGATACATAACTGCCCAAGATATTATCTTACCGCCTTCCGTAGAAATCGTTGATACGGCACAACCTATAGCTAACTTGACAGAACCCACGGATTTCCGTATTGAGTTACGGATCAAGAGAGATCGCGGATATCACACGGAAGTCAGAAAGAACACTCAAGATGGAAGTTATCCTATAGATGCTGTATCCATGCCTGTTCGAAATGTGAATTATAGTATTTTTGCTTGTGGGAATGGAAATGCAAAATATGAGATACTTTTTCTAGAAATATGGACCAATGGAAGTTTAACCCCTAAGGAAGCGCTTTATGAGGCTTCTCGTAATTTGATTGATTTATTTCTTCCTTTTCTTCACACGGAGGAAGAGGGTACTCGTTTCCAAGAAAATAAAAACAGGTTTACTTCCCCCCTTTTAAGCTTTCAAAAAAGATTAACTAATCTAAAGAAAAACAAAAAAAGAATTCCATTGAATTGTATTTTTATTGATCAATTAGAACTGCCTTCTAGAACGTATAATTGTCTCAAAAGGGCCAATATCCATACACTATTGGACCTTTTGAGTAAGACGGAAGAAGATCTGATGAGAATTGACAGTTTTCGTATGCAAGATGGAAAACAGATATGGGACACTCTAGAGAAGCATCTCCCAATGGATTTACCTAAGAATAAGTTCTAG	1806	0.3998	MTEKKNRREKKNPREAKITFEGLVMEALPNGMFRVRLENDTIILGYISGKIRSSSIRILMGDRVKIEVSRYDSSKGRIIYRLPHKDSKRTEDSKDTEDLKDTKDSKGVDELESFVPIRSINKDRAIPKIGSRRKVRIGLRRNARFSLRKSARRITKGVIHVQASFNNTIITVTDPQGRVVFWSSAGTCGFKSSRKASPYAGQRTAVDAIRTVGLQRAEVMVKGAGSGRDAALRAIAKSGVRLSCIRDVTPMPHNGCRPPKKRLYMVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLKKNKKRIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQIWDTLEKHLPMDLPKNKF	601

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc30317g00023	601	CDD	S1_IF1	18	81	IPR004368	GO:0003743\|GO:0006413
Stsc30317g00023	601	Pfam	RNA polymerase Rpb3/Rpb11 dimerisation domain	300	489	IPR011263	GO:0003899\|GO:0006351
Stsc30317g00023	601	NCBIfam	translation initiation factor IF-1	14	82	IPR004368	GO:0003743\|GO:0006413
Stsc30317g00023	601	FunFam	DNA-directed RNA polymerase subunit alpha	533	593	-	-
Stsc30317g00023	601	Pfam	Ribosomal protein S11	157	262	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
Stsc30317g00023	601	Hamap	DNA-directed RNA polymerase subunit alpha [rpoA].	270	599	IPR011773	GO:0003677\|GO:0003899\|GO:0006351
Stsc30317g00023	601	SUPERFAMILY	RBP11-like subunits of RNA polymerase	276	495	IPR036603	GO:0006351\|GO:0046983
Stsc30317g00023	601	Gene3D	-	9	92	IPR012340	-
Stsc30317g00023	601	FunFam	Translation initiation factor IF-1, chloroplastic	13	91	-	-
Stsc30317g00023	601	Pfam	Bacterial RNA polymerase, alpha chain C terminal domain	530	589	IPR011260	GO:0003677\|GO:0003899\|GO:0006351
Stsc30317g00023	601	NCBIfam	DNA-directed RNA polymerase subunit alpha	293	598	IPR011773	GO:0003677\|GO:0003899\|GO:0006351
Stsc30317g00023	601	PANTHER	TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC	3	104	IPR004368	GO:0003743\|GO:0006413
Stsc30317g00023	601	SUPERFAMILY	Nucleic acid-binding proteins	5	91	IPR012340	-
Stsc30317g00023	601	CDD	RNAP_alpha_NTD	284	493	-	-
Stsc30317g00023	601	SMART	S1_6	15	83	IPR022967	-
Stsc30317g00023	601	Hamap	30S ribosomal protein S11 [rpsK].	134	264	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
Stsc30317g00023	601	Hamap	Translation initiation factor IF-1 [infA].	12	85	IPR004368	GO:0003743\|GO:0006413
Stsc30317g00023	601	Gene3D	-	293	487	IPR036603	GO:0006351\|GO:0046983
Stsc30317g00023	601	FunFam	DNA-directed RNA polymerase subunit alpha	323	440	-	-
Stsc30317g00023	601	Pfam	Translation initiation factor 1A / IF-1	19	81	IPR006196	GO:0003723\|GO:0003743\|GO:0006413
Stsc30317g00023	601	Gene3D	-	323	440	IPR036643	-
Stsc30317g00023	601	SUPERFAMILY	Insert subdomain of RNA polymerase alpha subunit	323	439	IPR036643	-
Stsc30317g00023	601	ProSiteProfiles	S1 domain IF1 type profile.	8	83	IPR006196	GO:0003723\|GO:0003743\|GO:0006413
Stsc30317g00023	601	SUPERFAMILY	C-terminal domain of RNA polymerase alpha subunit	532	598	-	-
Stsc30317g00023	601	ProSitePatterns	Ribosomal protein S11 signature.	232	254	IPR018102	-
Stsc30317g00023	601	SUPERFAMILY	Translational machinery components	153	262	-	-
Stsc30317g00023	601	SMART	rpoldneu2	293	496	IPR011263	GO:0003899\|GO:0006351
Stsc30317g00023	601	Gene3D	Ribosomal protein S11	141	263	IPR036967	GO:0003735\|GO:0005840\|GO:0006412
Stsc30317g00023	601	FunFam	30S ribosomal protein S11, chloroplastic	140	264	-	-
Stsc30317g00023	601	Gene3D	-	522	595	-	-
Stsc30317g00023	601	Pfam	RNA polymerase Rpb3/RpoA insert domain	334	422	IPR011262	GO:0003899\|GO:0006351\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30317g00023	Stsc-Chr30317	75419	77756	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30317g00023	157	252	Cytoplasmic Ribosomal Protein Gene Family	AT3G52580	37.963	1.56e-12	63.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30317g00023	K03040		-	osa:3131431	670.233