Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30317g00008 ATGGCAACCCTTCGAGTCGACGAAATTCATAAAATTCTCCGCGAACGTATTGAACAATATAATAGAAAAGTAGGGATTGAGAATATCGGTCGCGTAGTTCAAGTGGGGGATGGGATTGCTCGTATTATAGGTCTTGGTGAAATAATGTCAGGCGAATTAGTCGAATTTGCAGAAGGGACTAGGGGTATTGCTCTGAATTTGGAATCCAAAAATGTTGGGATTGTATTAATGGGCGATGGGTTGATGATACAAGAGGGCAGTTTTGTAAAAGCAACAGGAAGAATTGCTCAGATACCCGTGAGCGAGGCTTACTTGGGTCGTGTTATAAATGCTCTGGCTAAACCTATTGATGGGAGAGGCGAAATTGTAGCTTCGGAATCTCGCTTAATTGAATCTCCTGCTCCGGGTATAATTTCCAGGCGTTCTGTATATGAACCCCTTCAAACGGGGCTTATTGCTATCGATTCGATGATTCCTATTGGGCGCGGTCAGCGAGAGTTAATTATTGGGGACAGACAAACCGGCAAAACAGCAGTAGCTACAGATACAATTCTCAATCAAAAAGGGCAAGATGTAATATGTGTTTATGTAGCTATCGGTCAAAGAGCATCCTCCGTAGCTCAAGTAGTAACTACTTTCCATGAAGAGGGGGCCATGGAATACACTATTGTAGTAGCTGAAATGGCGGATTCCCCTGCTACATTACAATACCTCGCTCCTTATACGGGAGCAGCCCTGGCTGAGTATTTTATGTACCGCGAACGGCATACTTTAATAATTTATGATGATCTCTCCAAACAGGCACAAGCTTATCGCCAAATGTCCCTTCTATTAAGAAGACCCCCCGGCCGCGAAGCTTACCCAGGGGATGTTTTTTATTTGCATTCACGCCTTTTAGAAAGAGCCGCTAAATTAAATTCTCTTTTAGGGGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACTCAATCTGGAGACGTTTCCGCCTATATTCCTACTAATGTAATCTCCATTACAGATGGACAAATATTCTTATCCGCAGATCTATTCAATGCCGGAATTCGGCCTGCTATTAATGTGGGTATTTCCGTTTCCAGAGTAGGATCCGCGGCTCAAATTAAAGCCATGAAACAAGTAGCTGGCAAATCAAAATTGGAATTAGCTCAATTCGCAGAGTTACAAGCCTTTGCACAATTCGCCTCTGCTCTCGATAAAACAAGTCAGAATCAATTGGCAAGGGGCCGACGATTACGAGAATTGCTTAAACAATCCCAAGCAAATCCTCTTCCAGTGGAAGAGCAGATAGCTACTATTTATATCGGAACAAGAGGATATCTTGATTCCTTAGAAATTGGACAGGTAAAGAAATTTCTGGATGAGTTACGTAAACACCTAAAAGATACTAAACCTCAATTCCAAGAAATTATATCTTCTAGCAAGACATTCACCGAGGAAGCGGAAATCCTTTTGAAGGAAGCTATTCAGGAACAACTCGAACGGTTTTCCCTTCAGGAACAAACATAA 1524 0.4219 MATLRVDEIHKILRERIEQYNRKVGIENIGRVVQVGDGIARIIGLGEIMSGELVEFAEGTRGIALNLESKNVGIVLMGDGLMIQEGSFVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEIVASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQDVICVYVAIGQRASSVAQVVTTFHEEGAMEYTIVVAEMADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQLARGRRLRELLKQSQANPLPVEEQIATIYIGTRGYLDSLEIGQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEEAEILLKEAIQEQLERFSLQEQT 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30317g00008 507 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 2 502 IPR005294 GO:0015986|GO:0045261|GO:0046933
Stsc30317g00008 507 CDD ATP-synt_F1_alpha_C 376 501 IPR000793 GO:0015986
Stsc30317g00008 507 PIRSF F_ATPase_subunit_alpha 2 504 IPR005294 GO:0015986|GO:0045261|GO:0046933
Stsc30317g00008 507 CDD F1-ATPase_alpha_CD 95 368 IPR033732 GO:0032559
Stsc30317g00008 507 Gene3D - 373 501 IPR038376 -
Stsc30317g00008 507 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 150 365 IPR000194 GO:0005524
Stsc30317g00008 507 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 373 501 - -
Stsc30317g00008 507 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 11 95 IPR036121 GO:0046034|GO:1902600
Stsc30317g00008 507 FunFam ATP synthase subunit alpha 95 372 - -
Stsc30317g00008 507 NCBIfam F0F1 ATP synthase subunit alpha 4 501 IPR005294 GO:0015986|GO:0045261|GO:0046933
Stsc30317g00008 507 Pfam ATP synthase alpha/beta chain, C terminal domain 372 496 IPR000793 GO:0015986
Stsc30317g00008 507 Gene3D - 1 94 IPR023366 -
Stsc30317g00008 507 Gene3D - 95 372 IPR027417 -
Stsc30317g00008 507 Hamap ATP synthase subunit alpha [atpA]. 2 502 IPR005294 GO:0015986|GO:0045261|GO:0046933
Stsc30317g00008 507 FunFam ATP synthase subunit alpha 373 503 - -
Stsc30317g00008 507 Pfam ATP synthase alpha/beta family, beta-barrel domain 27 93 IPR004100 GO:0046034|GO:1902600
Stsc30317g00008 507 ProSitePatterns ATP synthase alpha and beta subunits signature. 356 365 IPR020003 GO:0005524
Stsc30317g00008 507 FunFam ATP synthase subunit alpha 1 94 - -
Stsc30317g00008 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 371 IPR027417 -
Stsc30317g00008 507 CDD ATP-synt_F1_alpha_N 28 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30317g00008 Stsc-Chr30317 34881 36404 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30317g00008 33 371 Primary Pumps ATPases(2) AT4G38510 28.889 9.77e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30317g00008 K02111 - osa:3131390 945.651