Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30316g00011 ATGGCTCTTCAATCAGATTCCGATACAAAACTTGAGTTACTCAAACTACAAGTTGAGAAACAAGAGGAGGAGGAGGAAGAAGAAGATGCCTTTTTCATTGCACAAATGGCAAACACGGTTGTGGTTCCTTTTGCTGTGAGGACCACAATAGAGCTTGGTGTATTTGACATCATAGCCAAAGCAGGTGAAGGTGCAAAGCTCTCAGCAAAAGATATTGTGGATCAAATTGGAACCAACAACCCTGAAGCAGCAACTATGTTGGATCGTGTTCTTAGGCTTCTTGCATGTCACTCGTTCCTAAGTTGTTGTGTTGTTGAAGATCCAGAAAACCCTAATAGCTGCTTGCATGAGAGGCTGTATAGTCTCTCACCTGTTTCCAAATACTTTGTGACTGATGCTGATGGTTTGACTTTTGGGCCCAACTTAATGCTTCTTTTGGATAAAGTCTTAAATCCAGCCTGGATTGAACTGAAAGGAGCGATCTTAGAAGGAGGTATACCATTCAAGAGGGCTTACGGCATGAACGCCTTCGAGTATACAAACAAGGATCCAAGATTCAGTGAAGTTTTGAACAAAGCTATGCACAGCTCCTCTACTATATTAATGAAGAAGATTCTTGATGTGTACAAAGGCTTTCACCACATCAATAAACTAGTCGACGTTGGTGGCGGTTTTGGAATCAGTCTCAAATTGATTACTTCCAAATACCCTAATATCCAGGGTGTCAATTTTGATTTGCCTCATGTTATAGAAAACGCCCCTCTCTATCATGGTGTGGAGAACATAGGAGGAGATATGCTTGAGAGCATTCCCGAGGGAGATGCCATTTTCTTAAAGTGGGTACTTCATGACTGGGATGATGAACACTGCTTGAAGATATTGAAGAATTGCCACAAGGCAATAGGCAATGATGGGAAGGTGATTGTGGTGGAAAAAATAATTCCAATTGTGCCTGAGTCAACATCAGCTGCGGTCAAAGACTCTTTTACATCAGATGTTTTCATGATGACTCATTCGCCAGGGGGAAAGGAAAGAACCCACCAAGATTTCATGGATCTTGCTATTCGATCTGGATTTACTTCCATATCACTTGTGTGTTCTGCCTATGGCTTATGGGTTATGGAGTTCTACAAAAACCCAATAAACCCACACATTAATCATTAA 1164 0.4141 MALQSDSDTKLELLKLQVEKQEEEEEEEDAFFIAQMANTVVVPFAVRTTIELGVFDIIAKAGEGAKLSAKDIVDQIGTNNPEAATMLDRVLRLLACHSFLSCCVVEDPENPNSCLHERLYSLSPVSKYFVTDADGLTFGPNLMLLLDKVLNPAWIELKGAILEGGIPFKRAYGMNAFEYTNKDPRFSEVLNKAMHSSSTILMKKILDVYKGFHHINKLVDVGGGFGISLKLITSKYPNIQGVNFDLPHVIENAPLYHGVENIGGDMLESIPEGDAIFLKWVLHDWDDEHCLKILKNCHKAIGNDGKVIVVEKIIPIVPESTSAAVKDSFTSDVFMMTHSPGGKERTHQDFMDLAIRSGFTSISLVCSAYGLWVMEFYKNPINPHINH 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30316g00011 387 SUPERFAMILY "Winged helix" DNA-binding domain 24 132 IPR036390 -
Stsc30316g00011 387 FunFam Caffeic acid O-methyltransferase 130 378 - -
Stsc30316g00011 387 Pfam Dimerisation domain 45 95 IPR012967 GO:0046983
Stsc30316g00011 387 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 34 378 IPR016461 GO:0008168
Stsc30316g00011 387 PANTHER O-METHYLTRANSFERASE 36 376 IPR016461 GO:0008168
Stsc30316g00011 387 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 377 IPR029063 -
Stsc30316g00011 387 Gene3D - 14 129 IPR036388 -
Stsc30316g00011 387 PIRSF O-mtase 12 378 IPR016461 GO:0008168
Stsc30316g00011 387 FunFam Caffeic acid 3-O-methyltransferase 12 129 - -
Stsc30316g00011 387 Gene3D Vaccinia Virus protein VP39 131 378 IPR029063 -
Stsc30316g00011 387 Pfam O-methyltransferase domain 154 359 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30316g00011 Stsc-Chr30316 83215 86977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30316g00011 26 378 Monolignol Biosynthesis Gene Families AT5G54160 49.300 9.46e-125 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30316g00011 K13066 - gmx:100789402 458.373