Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30315g00008 ATGCCAGAGTCCTGTGAAGAAAATTCTGAGCTTCCTTCCAAGTCAAAGCCACAAGAAGAACATGGTTTTCCCATGGATTTTGATATATACCTTGAAAGTTCATCATGGAACTTGGATCATAACCCTTCTTCTTCCCAACCCATGTCCCCTTTCATCATAACAACCTCATCTGAACAACCTTTTTCTCCTCTCTGGGTTTTCTCTGATGTTGAAGATGATCACAGGCATGTCAGGGTTGTTGCAGGTGATAATACAAATACAAATTCAGCAATTGAAACTGAAAACCCGGTTGAAAATGATGACAACAAAAAAATAGTGTCACCCCCCTTTGTGCCTCTTCCACATATAAAAATTCCAGATGGTTATTGTCTAATTAAGGAAAGAATGACACAAGCACTTCGCCACTTCAAACAGTTGACTGAACAGAATTTTCTGGCTCAGGTTTGGGCACCTGTGAGGAACGGCAACCGCTATGCACTCACTACTTCGGGTCAGCCATTCGTTCTTGATCCACATAGTAATGGACTGCATCAGTACAGAACAGTTTCCCTGATGTATATGTTTCCTGTTGATGGGGAGAATGACGAAATCTTGGGACTTCCTGGTCGAGTTTTTCAGCAGAAGTTACCTGAATGGACTCCCAATGTTCAGTATTATACTAGTAGAGAGTATTCTAGGAGAAACCATGCACAACATTACAATGTTCGTGGAACGTTGGCTTTGCCTGTGTTTGAATCGCCAGGACAGTCATGTGTTGGTGTAATAGAGCTGATAATGACTTCAGAGAAGGTTAATTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCCCTTGAGGCAGTGAATTTGAGGAGTTCAGAAATTCTGGATCATCCGTTTGCCCAGATTTGCAACAAAGATCGCCAGAATGCATTAGCAGAGATTTTGGAGATATTAACAGTAGTATGTGAAACTCACAATTTACCACTGGCACAAACATGGGTTCCTTGTAGGCATCGGAGTGTTTTGGCACACGGTGGTGGTCTTAAGAAAAGCTGTTCTAGTTTCGATGGCCACTGCATGGGGCGAGTTTGCATGTCTACCTCCGATGTAGCATTCTATGTCATTGATGCTCATACATGGGGTTTCCATGATGCTTGCGCCGAGCATCACTTACAACAAGGTCAAGGCGTTGCTGGCAGGGCATTTTCATCCCATAACATGAGCTTCTGTGGAAACATAACTCAATTCTGCAAAACTGATTATCCTCTAGTTCATTATGCTCTCATGTTCGGGTTAACCAGCTGTTTCGCAATCTGTTTGCAAAGCTCTCATACCGGAAGTGATGAATACGTGTTGGAGTTTTTCCTGCCACCTAGTATCACCAACTTTTATGAACAAAAGGATTTGTTGGGGTCTATATTGTCAACAATGAAGCAGAATTTCCAGAGTCTTAAGGTTGCTGCTGGTGTGGAACTCGAGGAGAGTTGTTCAATTGAAGTTGTAGAACCAATAAATGAAAGAATTCATTTGAGCCTTGAATCTGTTCCAATTGCACAACCTGCTAAATCACCGCCACCTAGGCTCAACGCCTCACCGGATAAGGATGATGGAGTGCCACATGGTCCCCTAGAACAGCAAATGCCGCCATGCTTGGATGATAATGCAGGTGGAAGCACAGATCATATCTCTTCCTTAGAGGGTAAAATCAAGAAGAAACCCTCTGAAAGGAAACGTGGTAAAGCTGAGAAAATGATCAGTCTTGAAGTTTTGCAACGTTATTTCAGTGGGAGTCTGAAGGATGCTGCTAAGAGCCTTGGTGTTTGTCCTACAACTATGAAGCGTATCTGTAGGCAGCATGGAATATCCCGTTGGCCATCGCGAAAGATCAACAAGGTTAACCGTTCCTTGTCGAAGCTCAAGTGTGTCATTGAATCAGTCCAAGGTGCTGAAGGTGCATTTGCTTTGAATTCTGTTAATAAAAGCTCATTTACTGAGCCTTGTACTTCAAAAATGTTCAACTGCAATGCCTTGTTGAGCATCCGTCCATCCGAAACTCAGATGAATGAACATGATTTAGATACTTCGAGAGTGTCAGAAACAAACCGACAGGTCAGGACGCAAGAGAATCACATTCTCGGAGGGGAACAGAGTCCTGAGAAGGTGATCCAAGAAGAAGGTTGGTCCACTCAAGAAGTTGGCACTAAGGATCCAGAAAGGTTTAGAAATCCTAGTGGTTCAAGTGAAGATAGCGCGAATCATCATTCTCGCAATTCATGCCATGCTAGTCTCCCTAATGAAACTTCACCTGCAAATATATTCAGCACATTCAACAAAGAGAAATCTGTTCTGGTAAGGGGTTCAGCCGAGTCGACAGTGCAGCCAACTAATGCACTGAATTATGCAAATGCGTACACCGTGCTTAACTTCGAGGGAACGGAACCTCAAGAACCATTTGGCAGAATGCTACTTGAGGGTGTTGGTAGCTCTAAAGACTTGAGAAATTTGTGTCCTTTGGAGGATCAGGCTTTAGAAGCTTGCGGCGTTAATCCACCATGTGATGACTTGGCTCCTAAGCAATGCATGATGGATACTACCCTTAATAGCAACAACACCATGATACCTTCTGCACCTAAGAAAGAGATGAAGAGTGTGACAATTAAGGCAACTTATAAAGAAGATATCATAAGGTTTAGGGTGTCCTTGAACTGCTGCATTGCTGAATTGCAAGAAGAAATTTCAAAGAGATTGAAACTAGAAATTGGAACATTTGATATAAAGTATCTGGATGATGATAATGAATGGGTTTTGATATCATGCGATGCAGATCTTCTGGAGTGCATGGATGTTTTAACATCATCAGGAAGCAACATGATAAGGCTTGTGGTGCATGACATAGTTTCCATTCTTGGAAGCTCTTGTGAGAGCTCTGGGAACTGA 2916 0.4266 MPESCEENSELPSKSKPQEEHGFPMDFDIYLESSSWNLDHNPSSSQPMSPFIITTSSEQPFSPLWVFSDVEDDHRHVRVVAGDNTNTNSAIETENPVENDDNKKIVSPPFVPLPHIKIPDGYCLIKERMTQALRHFKQLTEQNFLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLHQYRTVSLMYMFPVDGENDEILGLPGRVFQQKLPEWTPNVQYYTSREYSRRNHAQHYNVRGTLALPVFESPGQSCVGVIELIMTSEKVNYAPEVDKVCKALEAVNLRSSEILDHPFAQICNKDRQNALAEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKSCSSFDGHCMGRVCMSTSDVAFYVIDAHTWGFHDACAEHHLQQGQGVAGRAFSSHNMSFCGNITQFCKTDYPLVHYALMFGLTSCFAICLQSSHTGSDEYVLEFFLPPSITNFYEQKDLLGSILSTMKQNFQSLKVAAGVELEESCSIEVVEPINERIHLSLESVPIAQPAKSPPPRLNASPDKDDGVPHGPLEQQMPPCLDDNAGGSTDHISSLEGKIKKKPSERKRGKAEKMISLEVLQRYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKCVIESVQGAEGAFALNSVNKSSFTEPCTSKMFNCNALLSIRPSETQMNEHDLDTSRVSETNRQVRTQENHILGGEQSPEKVIQEEGWSTQEVGTKDPERFRNPSGSSEDSANHHSRNSCHASLPNETSPANIFSTFNKEKSVLVRGSAESTVQPTNALNYANAYTVLNFEGTEPQEPFGRMLLEGVGSSKDLRNLCPLEDQALEACGVNPPCDDLAPKQCMMDTTLNSNNTMIPSAPKKEMKSVTIKATYKEDIIRFRVSLNCCIAELQEEISKRLKLEIGTFDIKYLDDDNEWVLISCDADLLECMDVLTSSGSNMIRLVVHDIVSILGSSCESSGN 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30315g00008 971 Pfam RWP-RK domain 578 625 IPR003035 -
Stsc30315g00008 971 MobiDBLite consensus disorder prediction 678 759 - -
Stsc30315g00008 971 SUPERFAMILY CAD & PB1 domains 874 961 - -
Stsc30315g00008 971 PANTHER PROTEIN NLP8 57 971 IPR045012 GO:0003700
Stsc30315g00008 971 ProSiteProfiles RWP-RK domain profile. 564 645 IPR003035 -
Stsc30315g00008 971 MobiDBLite consensus disorder prediction 1 24 - -
Stsc30315g00008 971 CDD PB1_NLP 877 957 IPR034891 -
Stsc30315g00008 971 Gene3D - 873 957 - -
Stsc30315g00008 971 SMART PB1_new 876 958 IPR000270 GO:0005515
Stsc30315g00008 971 Pfam PB1 domain 877 957 IPR000270 GO:0005515
Stsc30315g00008 971 MobiDBLite consensus disorder prediction 9 24 - -
Stsc30315g00008 971 MobiDBLite consensus disorder prediction 511 573 - -
Stsc30315g00008 971 MobiDBLite consensus disorder prediction 692 706 - -
Stsc30315g00008 971 ProSiteProfiles PB1 domain profile. 876 958 IPR000270 GO:0005515
Stsc30315g00008 971 MobiDBLite consensus disorder prediction 737 759 - -
Stsc30315g00008 971 MobiDBLite consensus disorder prediction 557 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30315g00008 Stsc-Chr30315 70573 74936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30315g00008 875 969 NLP Transcription Factor Family AT1G64530 57.292 1.16e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc30315g00008 PB1 1.5e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30315g00008 - - gmx:100780901 1327.77