Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30315g00006 ATGTCAAGATATGTAGCAGCAAAGGCATGGGGGAAACCAAATGTGTTTAGAAAAGACAGATACTCAATGTTTGGAGAGGGTTTGGTTATGACTGAAAGTGATCAATGGGTTCTTCATCGCCATGTTATAGCTCCAGCATTTAACCCTCTTAAATTGAAGGGAATGGGGAACATGATGGTTGAGTCAACAAAAAAAATGATAGAAAGATGGAACTACCAAATAAATTATGGTAACCATGAAATTGATGTTGAGAGGGAGATTATGGAAACAGCTGGTGAGATCATAGCAAAAGCAAGTTTTGGAATGGAAGATGATGAAAATGGGAAAATAGTTTTTAGAAAATTAAAAGAATTGCAAATGGTACTTTTTAAGAGCCACCGTTTTGTGGGGGTTCCCTTTGGCAATTTTTTTGCTATCAAGAAAACCCTAGAGGCCAAGAAAATTGGTCAAGAAGTTGATAAGCTCTTGATCTCTATTATAAATGATAGGATGATGAAAAGTGGAAAATCTCATCAAGAAGATTTGTTGGGTCATTTGTTGCAAGAAAATAATAATGGAGAGGAAAAGGGGAAATTCTCAATGAGAGGATTGGTTGATGAGTGTAAGACCTTTTTCTTTGGTGGCTATGAAACTACATCACTTTCCATCACTTGGAGTTTGCTCCTTCTAGCCATGCATGAAGATTGGCAAAATCAATTGAGAGATGAAATCAAACAAGTCATGGGCAATGGAGATTTTGATGTTGATGTCAACATGCTTAATAGTTTGAAAAAGATGAAATGGGTGATGAATGAAGCTGTAAGACTCTATCCACCATCACCAAATGTGCAAAGGCAAGCCAAAGAGGACATTAGGGTTGACAATTTTACAGTGCCTAAAGGGACCAACATTTGGATTGACCTTATAGCCATGCACCGCGACGCGGCGCTATGGGGAACCGACGCGAATGAGTTCAAACCGGAGAGGTTCAAGGAGGACGCCAACGGCGGATGCAACCACCAAATGGGGTACTTGCCTTTTGGATTTGGAGGGAGAATGTGTGTTGGTAGGAACTTGTCATTCATGGAGTATAAAATTGTGTTAACCCTACTTCTATCTAGGTTTAGGTTTAAAGTTTCCTCTTGTTATCAACATTCTCCAGCTATCATGCTATCACTTAGGCCTACTCATGGACTTCCTCTCATTGTTCAGCCTCTTTAG 1200 0.395 MSRYVAAKAWGKPNVFRKDRYSMFGEGLVMTESDQWVLHRHVIAPAFNPLKLKGMGNMMVESTKKMIERWNYQINYGNHEIDVEREIMETAGEIIAKASFGMEDDENGKIVFRKLKELQMVLFKSHRFVGVPFGNFFAIKKTLEAKKIGQEVDKLLISIINDRMMKSGKSHQEDLLGHLLQENNNGEEKGKFSMRGLVDECKTFFFGGYETTSLSITWSLLLLAMHEDWQNQLRDEIKQVMGNGDFDVDVNMLNSLKKMKWVMNEAVRLYPPSPNVQRQAKEDIRVDNFTVPKGTNIWIDLIAMHRDAALWGTDANEFKPERFKEDANGGCNHQMGYLPFGFGGRMCVGRNLSFMEYKIVLTLLLSRFRFKVSSCYQHSPAIMLSLRPTHGLPLIVQPL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30315g00006 399 Pfam Cytochrome P450 12 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30315g00006 399 PRINTS P450 superfamily signature 347 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30315g00006 399 PRINTS P450 superfamily signature 207 224 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30315g00006 399 PRINTS P450 superfamily signature 261 272 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30315g00006 399 PRINTS P450 superfamily signature 338 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30315g00006 399 PRINTS E-class P450 group I signature 337 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30315g00006 399 PRINTS E-class P450 group I signature 347 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30315g00006 399 PRINTS E-class P450 group I signature 196 213 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30315g00006 399 PRINTS E-class P450 group I signature 216 242 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30315g00006 399 Gene3D Cytochrome P450 4 399 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30315g00006 399 SUPERFAMILY Cytochrome P450 12 398 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30315g00006 399 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 340 349 IPR017972 GO:0005506|GO:0016705
Stsc30315g00006 399 PANTHER CYTOCHROME P450 FAMILY MEMBER 13 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30315g00006 Stsc-Chr30315 45494 48240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30315g00006 1 399 Cytochrome P450 AT5G52400 58.105 1.06e-173 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30315g00006 - - gmx:100785284 569.696