Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30314g00011 ATGGCTTCTTTTTCTTATGTGCAATGCAGCTTGGTTGTGATTGTTATGGTTTGTTTGGTGACATTGATGATTCCAACTACAACAAATGCAGCAGCACTTAATCCATATTTCTATGATAGAGTTTGTCCCCAAGCATTGCCAGTAATAAGGAGGGTGGTTCAAAAGGCAATTAATCGTGAAAGGCGAATGGGAGCTTCTTTGCTGCGTTTGCATTTCCATGATTGCTTTGTTAATGGGTGTGACGGATCGGTTCTGCTAGATGACACGGCAAACTTCACCGGAGAGAAGACAGCAAAACCAAACCTCAACTCAATCAGAGGTTTCGAAGTGGTTGATCAGATTAAGGCCGCTGTTGATAAAGCTTGCAAACGACCTGTCGTTTCATGTGCCGATATCTTAGCCCTTGCTGCTCGTGATTCTGTTGCCATACTGGGAGGTCCCCTATTTTGGTACCAAGTACCATTGGGAAGAAGAGACGCAAGAAACGCAAGCCAAACCGCCGCAAATAACAACTTGCCACCACCATTCTTCAACTTCACACAACTCCTTGCAAGTTTCAACAACCATGGCCTCAACACCAAGGACCTTGTTGCCCTCTCTGGTGCCCACACTATTGGCTTCTCAAAGTGCAAAAATTTCAGGAACAGAATCTACAACGACACTAACATTGATCCCAACTTTGCAACCTCTCTAAGGGCTAATTGCCCTAGCACTAGTGGTGTTGGTGACAACAATTTGGCACCGTTGGATCCAATCACTCCATCAAGGGTTGATAATTTTTACTACAAGGGGTTGGTGGGCAAAAAGGGAATTTTGCATTCGGATCAGGAGTTATATGGTGGGAATGGTACTTCTTCTGAGAGTGTTAAGTTGGTTGAGCTTTATAGCATTAACCCTTTTGCTTTTGCTAGAGACTTCAAAAATTCAATGATCAAGATGGGTAATTTGAGCCCTCTTACTGGGAACAATGGTGAGATTAGGCTCAATTGCAGAAGGGTTAATTAA 1005 0.4348 MASFSYVQCSLVVIVMVCLVTLMIPTTTNAAALNPYFYDRVCPQALPVIRRVVQKAINRERRMGASLLRLHFHDCFVNGCDGSVLLDDTANFTGEKTAKPNLNSIRGFEVVDQIKAAVDKACKRPVVSCADILALAARDSVAILGGPLFWYQVPLGRRDARNASQTAANNNLPPPFFNFTQLLASFNNHGLNTKDLVALSGAHTIGFSKCKNFRNRIYNDTNIDPNFATSLRANCPSTSGVGDNNLAPLDPITPSRVDNFYYKGLVGKKGILHSDQELYGGNGTSSESVKLVELYSINPFAFARDFKNSMIKMGNLSPLTGNNGEIRLNCRRVN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30314g00011 334 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc30314g00011 334 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc30314g00011 334 PRINTS Haem peroxidase superfamily signature 147 159 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc30314g00011 334 PRINTS Haem peroxidase superfamily signature 195 210 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc30314g00011 334 PRINTS Haem peroxidase superfamily signature 127 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc30314g00011 334 PANTHER PEROXIDASE 72-RELATED 30 333 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc30314g00011 334 CDD secretory_peroxidase 33 333 IPR033905 GO:0004601|GO:0042744
Stsc30314g00011 334 Pfam Peroxidase 50 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc30314g00011 334 Gene3D - 37 331 - -
Stsc30314g00011 334 ProSiteProfiles Plant heme peroxidase family profile. 32 334 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc30314g00011 334 SUPERFAMILY Heme-dependent peroxidases 33 334 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc30314g00011 334 FunFam Peroxidase 36 178 - -
Stsc30314g00011 334 Gene3D Peroxidase, domain 2 173 313 - -
Stsc30314g00011 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 195 205 IPR019793 -
Stsc30314g00011 334 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601
Stsc30314g00011 334 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc30314g00011 334 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc30314g00011 334 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc30314g00011 334 PRINTS Plant peroxidase signature 194 206 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc30314g00011 334 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc30314g00011 334 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc30314g00011 334 PRINTS Plant peroxidase signature 126 136 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc30314g00011 334 PRINTS Plant peroxidase signature 308 321 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc30314g00011 334 FunFam Peroxidase 173 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30314g00011 Stsc-Chr30314 90545 93146 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30314g00011 31 334 Peroxidase AT5G05340 58.553 2.18e-123 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30314g00011 K00430 - gmx:100816056 465.307