Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30314g00003 ATGCCGGAGATTGAAGAACCCTCGCCACCGTCGCCGCCGGAGCAAACGGCTCTGTTCGGAAAATACGACCTCGGTAGGCTCTTAGGATGCGGCGCGTTCGCGAAGGTTTACCACGCGCGGAACCTTGAGAGTGGGCAAAGCGTGGCGGTGAAGATCATATGCAAGAAGAAGTTACTGGGAACCGGTTTGGACGGTAACGTGAAGCGAGAGATAAGTATCATGAGTAGGTTGCACCACCCTCATATCGTGAAGCTTCATGAGGTTCTTGCGACGAAGACGAAGATCTTCTTTGTGATGGAGTTTATTAAAGGTGGTGAATTGTTTGCGAGGGTTTCTAAGGCGAGATTCTCGGAAGATCTGAGCCGTCGGTTTTTTCATCAGCTGATCTCGGCCGTTGGATATTGCCACTCGCGTGGGGTGTTTCATAGGGATCTGAAACCGGAGAATCTCTTGCTTGATGAACATGGCAATTTGAAGGTTTCAGATTTTGGATTGAGTGCTCTTAGAGATCAGATACACCCTGATGGACTATTACACACGCTGTGTGGGACCCCTGCTTACGTGGCACCGGAGATTCTTTCGAAACGCGGCTACGACGGTGCCAAAGTTGACGTATGGTCATGCGGCGTCGTTTTATTCGTTCTAACCGCAGGGTACTTGCCGTTTAACGACCCAAACTTAATGGTTATGTATAAAAAGATCTACAGAGGAGAGTTTCGTTGTCCACGTTGGATGTCACCGGATCTCAAAAGATTCCTCCGGAAGCTTCTAGATGTTAACCCAAACACAAGAATAACTGTCGACGAAATGAAAGAGGATCCATGGTTTAGAAAGGGCTACAAAGAGATTAAGCCTTGTGAGGAGGATTATGGGCTTGACATTGGGCTTGGGGTTGGGCCCAATAAGGTCTTGAATGCGTTTGACATAGTGACTTTTTCTTCCGGTTTGGATTTGTCAGGGTTGTTTAGTGATGGTAGAAATGGTAGTAGTAGGGGGGAGTGGTTGGTGGTTAGGGGGTTACCGGAGGAGATGGTGGAGTTGGCAGAGGAGGTTGGGGTGGCGCAAGGGATGGTGGTGAGGTGGAAGAAGGAAGGCGGGGTTGAGTTGGGAGAGACTAAAGGGGATTTGGAGATTGCGGTGGAAGCTTACCGATTACCGGCCGAGATGGTTTTGGTCGAGGTTAAGAAGAGATTTGGTAATGATATAGTTTTTAGAGAATATTGGGAGAATAAACTCAAGCCTAGGTTCCTTTTGTTAAGATGTGGCTCTGATGTTGCGACCACATCGTCGCAACATAGTGGGAAACCAGAGTCTCCGGTTCTCGGCTAG 1329 0.4868 MPEIEEPSPPSPPEQTALFGKYDLGRLLGCGAFAKVYHARNLESGQSVAVKIICKKKLLGTGLDGNVKREISIMSRLHHPHIVKLHEVLATKTKIFFVMEFIKGGELFARVSKARFSEDLSRRFFHQLISAVGYCHSRGVFHRDLKPENLLLDEHGNLKVSDFGLSALRDQIHPDGLLHTLCGTPAYVAPEILSKRGYDGAKVDVWSCGVVLFVLTAGYLPFNDPNLMVMYKKIYRGEFRCPRWMSPDLKRFLRKLLDVNPNTRITVDEMKEDPWFRKGYKEIKPCEEDYGLDIGLGVGPNKVLNAFDIVTFSSGLDLSGLFSDGRNGSSRGEWLVVRGLPEEMVELAEEVGVAQGMVVRWKKEGGVELGETKGDLEIAVEAYRLPAEMVLVEVKKRFGNDIVFREYWENKLKPRFLLLRCGSDVATTSSQHSGKPESPVLG 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30314g00003 442 ProSiteProfiles Protein kinase domain profile. 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30314g00003 442 CDD CIPK_C 305 414 - -
Stsc30314g00003 442 ProSitePatterns Protein kinases ATP-binding region signature. 28 55 IPR017441 GO:0005524
Stsc30314g00003 442 FunFam Aurora kinase A 14 105 - -
Stsc30314g00003 442 Gene3D Kinase associated domain 1, KA1 300 419 - -
Stsc30314g00003 442 SUPERFAMILY Protein kinase-like (PK-like) 19 284 IPR011009 -
Stsc30314g00003 442 SMART serkin_6 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30314g00003 442 Pfam NAF domain 303 360 IPR004041 GO:0007165
Stsc30314g00003 442 Gene3D Transferase(Phosphotransferase) domain 1 12 293 - -
Stsc30314g00003 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Stsc30314g00003 442 FunFam Non-specific serine/threonine protein kinase 13 301 - -
Stsc30314g00003 442 ProSiteProfiles NAF domain profile. 299 323 IPR018451 GO:0007165
Stsc30314g00003 442 Pfam Protein kinase domain 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30314g00003 442 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 16 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30314g00003 Stsc-Chr30314 26917 29333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30314g00003 1 430 CBL-interacting serine-threonine protein kinases AT2G30360 60.731 0.0 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Stsc30314g00003 Pkinase 8.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30314g00003 - - gsj:114377188 592.423