Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30313g00022 ATGGTATCCAATAACCCGAATGATCCCGCGAAGAAGACGCGGAAGCCATACACCATAACTAAGTCTAGAGAGAGCTGGACAGAACCCGAGCACGACAAGTTCCTCGAAGCTCTTCAACTCTTTGACCGAGACTGGAAAAAGATTGAAGCATTTGTTGGATCCAAGACAGTTATTCAGATACGTAGCCATGCACAAAAATACTTTCTTAAAGTTCAGAAGACCGGAACAAGTGAACAACTTCCTCCACCCAGACCAAAACGAAAAGCCATTCATCCATATCCTCAGAAAGCTTCTAAAAATGCACCGGTACTCGCACAACTATCTGGATCCTTTCAGTCTTCATCTTCTTTGCTTGAATCTGGATATGTCCTGCAGCCTGATTCTTCAGCAATGCTTAAAACACCTATTGTTGGCACTGCAATGTCTTCCTGGTCAAACAACACCTTGCAGCAAAAAGGCAATGCATTGCATGGGCAAAAAGTAAACAATTGTTGCAGTAGCAGCGAAAGCATTCCCAGAGCACAACCACCTGGTGAATCTAATGTTCAAGGGAATAATATCCATCCCTTGAGAGTTCTTCCAGATTTCACTCAAGTGTACCGCTTCATTGGAAGTGTATTCGACCCAAGAGTAACTGGAAATCTACAGAAACTTAAAGGGATGGATCCTATAGATGTTGAAACGGTGCTGCTACTGATGAGAAATCTGTCCATCAATTTAAGAAGCCCAGATTTCGAAGATCATAAATTTGAACGACTACTATGGTCAACATCAAATTGCTTGCTCAAGGATAGAAGGAATGATAATGAGCTTCATATCTGTTGA 825 0.4206 MVSNNPNDPAKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKTGTSEQLPPPRPKRKAIHPYPQKASKNAPVLAQLSGSFQSSSSLLESGYVLQPDSSAMLKTPIVGTAMSSWSNNTLQQKGNALHGQKVNNCCSSSESIPRAQPPGESNVQGNNIHPLRVLPDFTQVYRFIGSVFDPRVTGNLQKLKGMDPIDVETVLLLMRNLSINLRSPDFEDHKFERLLWSTSNCLLKDRRNDNELHIC 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30313g00022 274 CDD SANT 25 68 IPR001005 -
Stsc30313g00022 274 Gene3D - 26 73 - -
Stsc30313g00022 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 72 IPR017930 -
Stsc30313g00022 274 NCBIfam myb-like DNA-binding domain, SHAQKYF class 21 70 IPR006447 GO:0003677
Stsc30313g00022 274 ProSiteProfiles SANT domain profile. 21 72 IPR017884 -
Stsc30313g00022 274 FunFam protein REVEILLE 6 isoform X1 25 73 - -
Stsc30313g00022 274 SMART sant 22 70 IPR001005 -
Stsc30313g00022 274 MobiDBLite consensus disorder prediction 1 25 - -
Stsc30313g00022 274 ProSiteProfiles Myb-like domain profile. 18 68 IPR001005 -
Stsc30313g00022 274 PANTHER SWI/SNF COMPLEX-RELATED 6 241 - -
Stsc30313g00022 274 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Stsc30313g00022 274 Pfam Myb-like DNA-binding domain 23 68 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30313g00022 Stsc-Chr30313 80680 83559 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc30313g00022 Myb_DNA-binding 3.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30313g00022 - - aip:107619038 481.1