Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30313g00006 ATGGGCAGCATCCAAGTACCTGATGCTCAACAACAAGACGCAGACACAGTCTATGTTGCGGTGGGAAACAACATTCACAACACCCAACAACTATTGCATTGGGCTTCGCACAATTTCCCTTCCAAATCTATTTGCCTCCTTCACGTTCACCATCCTCACCCCCATAGAAACCCTTCTAGGGATGAAACACAATATCATTCATTCTCGGAAGATGAAAGTAAAAAAATGCATGAACTCTTGGACCAATATGTTGCCAATCTTGTCCATACAGGGGTAAGGGTGTATAAATTGTTGATTGAGATGGACAATACTGAGAAAGGGATTAGGGAAGCTATTGCTCAGCACAATATTAGATTGCTTGTAATTGGAGCTGCAGCAGAGAGATATAACTTAGGTAAACTGGTTGAGCAAGAGTCAACGAAGAGTATTCCTTCACTTAAACAAGCATTTCCATCATGTAATATTTGGTTCATTTGCAATGGCATCATAAAATGTACCAGGGTAGATAGTAAACTTACACCTGAAATAGAGACTGCCCCTCCACTGTTGGTGCTCAATTCACATGCAGAAGCCGAACAATCACAGAAGTTTGAATCTGAATCAATTCCTAATGGACTGGAACATTTAGATTCTGACGATGTGGAAGAAATTGAAACTTTCAGTTCCCTCGGTTCATTATGTTCAAAATGGTCCTCCATTAGTGTCGCTGACAGTTCAAACTTGACAGGTTTGCTGTTTCATGAGGAGGAGGTAGATGATGAAATTGAAGACAAAAGCGAAATAAATGGTAGACTGGAAGAGTCCACCAGAGATACTAAAAGCATGAGGCGAAAAAAATTTGAACAGGCTTTAAAGCAGTGGAAAGTCAAAGAAAGAACTTTGGAGGGTGAAGTATTAGAAATAGAAAGTCTGTGTGCTAAGGAGAAAAACAAAAGAAGAGAAGTTGAAGAACAATTGGCTAGAGAGAAGGAAGAATTACAAAAAACAAAGAATCAGCAAGATGAAATAATGCATGAGTTGCTAGCTGTCCAAGAACAAAATTCAGCACTTGAGAACCAACTTTCTGAGACACAGGATACAGCTAAAGAGTTGGAGGAGAAGATTTTATCCGCTGTGGACCTCTTGATAAGTTTCAAGGAAAAACGAGATAGGTTGCAGATAGAGTGTGCAAATACAGCAAGGCAAGTCCAAGTGCTGAGGGAATTCGGAAAATCACATACGGCATTTTCATATGCTGTAGAGTTCCCTGTATTTTCTTTCATGGAGATCAACGAGGCAACTAATGATTTTGATCCATCTTGGAAGATTGGAGAAGGAAGGTATGGAAGTGTTTACAAAGGAGTGCTTCGCAATATGCATGTTACTATAAAAATGTTGCCTTCTTATGGCTGTCAGAGCCAATTGGAGTTTGAACGTCAGGTAGCAGTTTTGAGTCGGATGAGACATCGAAACCTGTTGACACTGATTGGAACCTGTGCCGAGTCTAGGTCACTTGTATATGAATATCTAAACAATGGCAGCCTTGAAGGCCACCTTGCCCGCAAAGAAAAGTCTCCACTCCCATGGCAAGTTCGAATATCCATTGCTGCTGACATATGCTCTGCTCTAATTTTTCTTCACTCTGGCGAGCCTAGTATTATACATGGGAATTTGAAAGCTAGTAAGGTTCTCCTTGATGCTAACTTTGTTGCCAAACTGGCTGACATTGGCATTCGTGATTTAGTTGAAAAGAATGTGGATTCAGCTGACGCAACCAGAATACACAACCACTCAAATGAAAGTTTGTTATATGTTGATCCAGAGTATGTTGCCACTGGCAAATTCACTCCAGAATCAGATGTGTATTCATTTGGAATCCTATTGTTGCAACTTCTAACTGGAAGACCACTTCTGGGGCTAGTCAGAGATGTCAAATGTGCACTGGAAAAAGATAACCTTGAAGCAGTATTGGACTTCTCAGCTGGTGAGTGGCCACTTGATCAAACTATACATCTGGCATATTTAGCATTGAGGTGTTGTGAGAAGACTTGGCTGAATCGGCCGGACCTCACATCAGATATTTGGGATGTTCTTGAACCATTCAAAACAATATGCATGAATATTCCACCATATTTGACGTCCAAGAAGCATCGCCGCACTCCGTCCCACTTTGTATGCCCCATTGTGCAGGAGGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACATATGAAGCCGAGGCAATAAGAGAATGGTTGGATAGTGGTCATGACACTTCCCCAATGACAAACCTCAAGCTTGAGCACACAAATTTAGTGCCTAATTATGCATTACACAATGCAATTCAAGAGTGGCAGCAACTACAGTGA 2352 0.4116 MGSIQVPDAQQQDADTVYVAVGNNIHNTQQLLHWASHNFPSKSICLLHVHHPHPHRNPSRDETQYHSFSEDESKKMHELLDQYVANLVHTGVRVYKLLIEMDNTEKGIREAIAQHNIRLLVIGAAAERYNLGKLVEQESTKSIPSLKQAFPSCNIWFICNGIIKCTRVDSKLTPEIETAPPLLVLNSHAEAEQSQKFESESIPNGLEHLDSDDVEEIETFSSLGSLCSKWSSISVADSSNLTGLLFHEEEVDDEIEDKSEINGRLEESTRDTKSMRRKKFEQALKQWKVKERTLEGEVLEIESLCAKEKNKRREVEEQLAREKEELQKTKNQQDEIMHELLAVQEQNSALENQLSETQDTAKELEEKILSAVDLLISFKEKRDRLQIECANTARQVQVLREFGKSHTAFSYAVEFPVFSFMEINEATNDFDPSWKIGEGRYGSVYKGVLRNMHVTIKMLPSYGCQSQLEFERQVAVLSRMRHRNLLTLIGTCAESRSLVYEYLNNGSLEGHLARKEKSPLPWQVRISIAADICSALIFLHSGEPSIIHGNLKASKVLLDANFVAKLADIGIRDLVEKNVDSADATRIHNHSNESLLYVDPEYVATGKFTPESDVYSFGILLLQLLTGRPLLGLVRDVKCALEKDNLEAVLDFSAGEWPLDQTIHLAYLALRCCEKTWLNRPDLTSDIWDVLEPFKTICMNIPPYLTSKKHRRTPSHFVCPIVQEVMEDPYIAADGFTYEAEAIREWLDSGHDTSPMTNLKLEHTNLVPNYALHNAIQEWQQLQ 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30313g00006 783 Gene3D Phosphorylase Kinase; domain 1 403 502 - -
Stsc30313g00006 783 CDD RING-Ubox_WDSUB1-like 714 769 - -
Stsc30313g00006 783 Pfam Protein tyrosine and serine/threonine kinase 435 683 IPR001245 GO:0004672|GO:0006468
Stsc30313g00006 783 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 125 - -
Stsc30313g00006 783 ProSiteProfiles U-box domain profile. 712 783 IPR003613 GO:0004842|GO:0016567
Stsc30313g00006 783 Gene3D Transferase(Phosphotransferase) domain 1 503 697 - -
Stsc30313g00006 783 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 712 783 IPR013083 -
Stsc30313g00006 783 SMART Ubox_2 716 779 IPR003613 GO:0004842|GO:0016567
Stsc30313g00006 783 Gene3D HUPs 15 137 IPR014729 -
Stsc30313g00006 783 ProSiteProfiles Protein kinase domain profile. 430 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30313g00006 783 SUPERFAMILY Protein kinase-like (PK-like) 407 691 IPR011009 -
Stsc30313g00006 783 Pfam U-box domain 714 780 IPR003613 GO:0004842|GO:0016567
Stsc30313g00006 783 PANTHER OS02G0152300 PROTEIN 17 778 - -
Stsc30313g00006 783 Coils Coil 277 374 - -
Stsc30313g00006 783 SUPERFAMILY RING/U-box 711 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30313g00006 Stsc-Chr30313 25338 30946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30313g00006 72 780 U-box Gene Family AT3G49060 44.233 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc30313g00006 PK_Tyr_Ser-Thr 1.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30313g00006 - - aprc:113871315 990.334