Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30313g00003 ATGTCAGAATCTGAAGAAGATAAAACTGAATTTGCTTCTCCAAACTCAAAGCACCAACAACAACACCCTCCTGCTTCTGCCACCATGGATTTTGATCTGGACTTGGAAACTTCTTGGCCCTTGGATCACTTCTCCTTCCTCTCCAATAACCCTATGTCACCTTTTCACTTCCCAATCTCATCTGAACAGCCTTCTTCCCCTCTTTGGCTCCTCTCTGATGCAGAAGATGAAAGGCTCAACAACACTCTCTCTGCAGCTCCAGCTTTCTCTGATTTCCACAAGATATTCCCTTGTGATTCAAACTCAGTAACTGAAAAGCCAGTGGAGAATGCTAATGATGAAGACAAGAAACTGTTGCCACCCATTGTGGCTATGCCACCATTGGAAATTTTGGATCGGTATTGTATAATCAAGGAAAGGATGACACAAGCGCTTCGATACTTCAAAGAGTTGACTGAACAGAATGTTCTGGCGCAGGTTTGGGCGCCTGTGAGAAATGGTAATAGATTTGTGCTTACAACTTCAGGTCAACCATTTGTTCTTGATCCACATAGTAATGGACTCCACCAGTACAGAACGGTGTCCCTGATGTATGTGTTTTCGGTGGATGGTGAAAATGATGAATCTCTCGGACTTCCTGGTCGAGTTTATCAGCAAAAGGTACCAGAATGGTCACCAGATGTTCAGTATTATTCTAGTAAGGAGTATCCTCGCAGAGATCATGCACAACATTATAATGTCCGCGGTACCTTGGCGTTGCCTGTCTTTGAACCTTCAATGCAGTCTTGTGTAGGTGTGTTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAAGTTGATAAAATTTGCAAAGCCCTCGAGGCGGTGAATTTGAAGAGTTCAGAAATTTTAGACCATCAATACACTCAGATTTGTAATGAAGGTCGCCAGAACGCTCTAGCAGAGATCTTGGAGATATTGACAGTGGTTTGTGAAACTCACAACTTACCTTTGGCACAAACATGGGTTCCATGTAGGCATCGGAGTGTTCTGGCCCATGGAGGTGGCCTAAAGAAAAGCTGTTCAAGTTTCGATGGTAGTTGCATGGGGAAAGTTTGCATGTCTACAACTGATATAGCATTCTATATCATAGATGCTCATTTATGGGGTTTCCGCGAGGCCTGTGTTGAACATCACTTACAGCAAGGTCAAGGGGTTGCTGGCAGGGCTTTTTCTTCACATAGCATGAGCTTCTGTGGGAACATTACCCAATTCTGCAAAATCAATTACCCTTTAGTTCATTATGCTCTCATGTTTGGGTTAACTAGCTCCTTTTCAATCTGTTTGAGAAGCTCACATACCGGAGATGATGACTATGTATTAGAGTTTTTTCTGCCACCTAGGATCACAGACTTTAACGAACAGAAGACTTTGTTGGGATCCATATTGGCAATAATGAAACAGCATTTCCAGAGTCTTAAGATCGCTTCTGGTGTTGAACTTGAGCAGCATAGTTCAATTGAAATTATTGAAGCAACAACTGAAGGAGTTCATCTGAGGTTTGAATCTATTCCAGTTAGACAGGATGCTTCACCGAATGTGAGGGAGGAATTTGCACAAGATCCCTCATTGCAGAAAATAATGATGTGCCACAATGATGTAAGGAGTATTGGTGATCAGATACCCTCCTTAGAAACTAAAAATCCAAAGAAGCAATCAGAGAGGAAACGTGGGAAAACTGAAAAATCAATAAGTCTTGAAGTTCTGCAACGTTATTTTTCTGGGAGTCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCAACTACAATGAAGCGCATCTGCAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCCTGTCCAAGCTCAAGCGCGTTATTGAATCAGTCCAAGGTGCTGAAGGTGCGTTCGCTTTGAATCCTCTAAGCACAAGTCCTCTTCCCTTTCCAGAGCCTTCTACTCCGAACAAGTTCAGCCAGCAAGCCTCACCAACCGAACCTCAGATAAGAGAAAATGAACTAGATGCCTCTAAAGTTTCAGAAACAACCAAACTTGCCAGAGCAAAGTCCCGCGAGAAAATAGTTAATGGTAAAAGCAGTTCTATTCGGGAGGTAGGGAAGGAAACAAAGGGGACTAGAGCAAGGAGTTGCTCTAGTGCAGATAGCACAAATCCTACTTCTCATGGTTCATGCCATGGTAGCCCCCCTATTGAAAGTTCACCCGGAAAAGATATATTCATTACATCAAACAATGATCAAAGTGTTGGTATAAGGTCGCCAGAATCGACAATGCAACCGCTGAATAATACACTGAAATATCCAACGTCATGCCCTTTGCCTGATATGGTGGCAACAGAACTTCAAGAGCCATTTGGTGGAATGCTAATAGAAGATGCTGGAAGTTCTAAAGACTTGAGAAACCTATGTCCTTCTGTAGCCGAGGCAATTCTGGAGGACATGGCCCCGGAACCTTGCCGGACTAATCCTCCATTTTCTGGGTTGGCTCCCAAGCAATGCATGAATCCCCTTAAGGAGACCATGACACCCTTTGTGCCTGGGAAAGAAATGAAGACTGTTACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTAGGGTTTCTTTAAATTGTAGCATTGTGGAACTGAAAGAAGAAGTTGCCAAAAGGTTGAAACTAGAAGTAGGTACTTTTGATATCAAGTACCTTGATGATGATCATGAATGGGTTTTGATAGCATGTGATGCAGATCTACAAGAGTGTATAGATGTTTCAAGATCATCAGCAAGTAACATAATAAGGGTTTTGGTGCATGAAATAACTTCCAATCTTGGAAGCTCATGTGAGAGCTCAGGGGAGTAA 2895 0.4276 MSESEEDKTEFASPNSKHQQQHPPASATMDFDLDLETSWPLDHFSFLSNNPMSPFHFPISSEQPSSPLWLLSDAEDERLNNTLSAAPAFSDFHKIFPCDSNSVTEKPVENANDEDKKLLPPIVAMPPLEILDRYCIIKERMTQALRYFKELTEQNVLAQVWAPVRNGNRFVLTTSGQPFVLDPHSNGLHQYRTVSLMYVFSVDGENDESLGLPGRVYQQKVPEWSPDVQYYSSKEYPRRDHAQHYNVRGTLALPVFEPSMQSCVGVLELIMTSQKINYAPEVDKICKALEAVNLKSSEILDHQYTQICNEGRQNALAEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKSCSSFDGSCMGKVCMSTTDIAFYIIDAHLWGFREACVEHHLQQGQGVAGRAFSSHSMSFCGNITQFCKINYPLVHYALMFGLTSSFSICLRSSHTGDDDYVLEFFLPPRITDFNEQKTLLGSILAIMKQHFQSLKIASGVELEQHSSIEIIEATTEGVHLRFESIPVRQDASPNVREEFAQDPSLQKIMMCHNDVRSIGDQIPSLETKNPKKQSERKRGKTEKSISLEVLQRYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFALNPLSTSPLPFPEPSTPNKFSQQASPTEPQIRENELDASKVSETTKLARAKSREKIVNGKSSSIREVGKETKGTRARSCSSADSTNPTSHGSCHGSPPIESSPGKDIFITSNNDQSVGIRSPESTMQPLNNTLKYPTSCPLPDMVATELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDMAPEPCRTNPPFSGLAPKQCMNPLKETMTPFVPGKEMKTVTIKATYREDIIRFRVSLNCSIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECIDVSRSSASNIIRVLVHEITSNLGSSCESSGE 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30313g00003 964 SMART PB1_new 869 951 IPR000270 GO:0005515
Stsc30313g00003 964 Pfam PB1 domain 869 950 IPR000270 GO:0005515
Stsc30313g00003 964 Gene3D - 865 950 - -
Stsc30313g00003 964 MobiDBLite consensus disorder prediction 665 681 - -
Stsc30313g00003 964 SUPERFAMILY CAD & PB1 domains 866 954 - -
Stsc30313g00003 964 PANTHER PROTEIN NLP8 61 963 IPR045012 GO:0003700
Stsc30313g00003 964 ProSiteProfiles RWP-RK domain profile. 566 647 IPR003035 -
Stsc30313g00003 964 ProSiteProfiles PB1 domain profile. 869 951 IPR000270 GO:0005515
Stsc30313g00003 964 Pfam RWP-RK domain 579 627 IPR003035 -
Stsc30313g00003 964 MobiDBLite consensus disorder prediction 723 745 - -
Stsc30313g00003 964 MobiDBLite consensus disorder prediction 652 760 - -
Stsc30313g00003 964 MobiDBLite consensus disorder prediction 554 577 - -
Stsc30313g00003 964 MobiDBLite consensus disorder prediction 1 26 - -
Stsc30313g00003 964 FunFam RWP-RK domain-containing protein 866 950 - -
Stsc30313g00003 964 MobiDBLite consensus disorder prediction 682 722 - -
Stsc30313g00003 964 CDD PB1_NLP 870 950 IPR034891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30313g00003 Stsc-Chr30313 13573 17426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30313g00003 271 964 NLP Transcription Factor Family AT4G24020 53.741 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc30313g00003 PB1 2.7e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30313g00003 - - aip:107618129 1791.16