Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30312g00008 ATGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAAGGGATGATGAGTGCGAGCAACAATAACAAGATAGAGAGGGGCCACCAGATGTACCGTGAGGGCCGATACAGGGAAGCCTTAGGGTTTTACACGGAAGCCATCGCCATCGCTAAAACCAAACCCCACAAGATCGCTCTCCACAGCAACCGCGCTGCTTGCTTCCTCAAACTTCACCATTTCAAAAAGGCAGCAGAAGAGTGTACCTCAGTGCTTGAGCTTGATCAAAACCACAGTGGGGCATTGATGCTGAGGGCTCAAACACTCGTCACCCTGAAGGAGTACCATTCGGCGCTTTTTGATGTCAACAGGCTTTTAGAGTTGAACCCATCTTCTGAAGTCTATCAAAATCTTCACGCTCGCTTGAAGACGCAATTGACACTTGCTCCGATACCGGAGTCAGAAGAGGAGTTTGAGGAGCAGGAAGAAGAATCTGAAGACAATTCCGAGGTGATACTAGAAGGAGAGAATAACGAGGAACAAATGGGAGGCAAGTATCTGGCAACTTCGAATATTAGGATTGATCAGAAGGTTGAGCTCAGGAAAGATATCATAAATGCTGAATGTGCTTCCCAAGAAACAAACTCCAAGCTCCTATCCGAAGATGGAAGAGACCAGAACAGTGAGCCTGAGAAGTCCACAGCAGAGACTGTAGCACCTAAAGCACTGAACAGGGAATCAACTGAGCAACAAACCAAAGCATGGCAAACGATTCCCAAACCGAAAGGACATTCAGCGTTGGACTATGCACGGTGGGACAGTGTTGAAGATGATTCTAGCGAAGATGACGACGAGGATGAAGATGAAGAATCTTTACCCCAGTACCGATTCCGTGTAAGAACAGTTGGGGTACGGCCTGTCAAGTGA 897 0.476 MEKEKEKEKEKGMMSASNNNKIERGHQMYREGRYREALGFYTEAIAIAKTKPHKIALHSNRAACFLKLHHFKKAAEECTSVLELDQNHSGALMLRAQTLVTLKEYHSALFDVNRLLELNPSSEVYQNLHARLKTQLTLAPIPESEEEFEEQEEESEDNSEVILEGENNEEQMGGKYLATSNIRIDQKVELRKDIINAECASQETNSKLLSEDGRDQNSEPEKSTAETVAPKALNRESTEQQTKAWQTIPKPKGHSALDYARWDSVEDDSSEDDDEDEDEESLPQYRFRVRTVGVRPVK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30312g00008 298 SUPERFAMILY TPR-like 23 135 IPR011990 GO:0005515
Stsc30312g00008 298 Gene3D Tetratricopeptide repeat domain 15 160 IPR011990 GO:0005515
Stsc30312g00008 298 MobiDBLite consensus disorder prediction 230 248 - -
Stsc30312g00008 298 MobiDBLite consensus disorder prediction 265 280 - -
Stsc30312g00008 298 MobiDBLite consensus disorder prediction 205 285 - -
Stsc30312g00008 298 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 14 298 - -
Stsc30312g00008 298 SMART tpr_5 55 88 IPR019734 GO:0005515
Stsc30312g00008 298 SMART tpr_5 18 51 IPR019734 GO:0005515
Stsc30312g00008 298 SMART tpr_5 89 122 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30312g00008 Stsc-Chr30312 57015 61230 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30312g00008 21 136 Calmodulin-binding Proteins AT3G25230 32.812 5.15e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30312g00008 - - gmx:100792046 396.741