Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30312g00005 ATGAATGATGGTAGACAAATGGGGTTGCATTACATGGATAATGGCTTCCCTTATGCGGTTAATGATAGCAACTTCGTCGACTTCTTCCAAGGACTGTCGCATGTACCCGTCAATTATGCCTTTGCTGGCTCAATGCCTGATCAGGAATGTGTTTACTGGTCGATGAACATGAATCAATATAAGTTTGGATTATCTGGTCCGGGAAGTACATCCTATTATGGTTCTTACGAGGTAAATGATCATTTGCCCAGAATGGAGATCAACAGGGCAGAGTGGGAATATCCTTCGGTAACAATCACTGAGGAGCCAGCTACAGCAGATTCTCCACCCATAAGAGAGGGAGTCACAAGCATGCAGACCATCCCTGAAGAATGCAGTCCAAATCATCATGAGTCTGATGGCAGCCAGGTCATATGGCAAGACGATATTGATCCTGATAATATGACATACGAGGAACTACTGGATCTGGGTGAGGCAGTTGGAACTCAAAGCCGAGGTCTCTCCCAAGAACTTATTGATACACTTCCAACCTCAAAGTACAAATTTGGAAGTTTATTCAAACGAAAAAATTATGGCAAAAGGTGCGTCATTTGTCAGATGACATATAGAAGAGGTGACCAGCAAATGAAATTGCCATGCAGCCATGTCTATCATTGTGAATGCATTACCAAATGGCTTGGCATTAACAAGAAATGTCCAGTTTGCAATATTGAAGTGTTTGGTGAGGAATCAACCCATTAG 741 0.4265 MNDGRQMGLHYMDNGFPYAVNDSNFVDFFQGLSHVPVNYAFAGSMPDQECVYWSMNMNQYKFGLSGPGSTSYYGSYEVNDHLPRMEINRAEWEYPSVTITEEPATADSPPIREGVTSMQTIPEECSPNHHESDGSQVIWQDDIDPDNMTYEELLDLGEAVGTQSRGLSQELIDTLPTSKYKFGSLFKRKNYGKRCVICQMTYRRGDQQMKLPCSHVYHCECITKWLGINKKCPVCNIEVFGEESTH 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30312g00005 246 Pfam Ring finger domain 194 236 IPR001841 -
Stsc30312g00005 246 SMART ring_2 195 235 IPR001841 -
Stsc30312g00005 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 240 IPR013083 -
Stsc30312g00005 246 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 242 IPR033276 GO:0004842|GO:0016567|GO:0046621
Stsc30312g00005 246 SUPERFAMILY RING/U-box 194 240 - -
Stsc30312g00005 246 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Stsc30312g00005 246 FunFam E3 ubiquitin ligase BIG BROTHER 157 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30312g00005 Stsc-Chr30312 32742 39044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30312g00005 10 246 C3H Transcription Factor Family AT3G63530 57.983 1.33e-102 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30312g00005 K19045 - gmx:100792734 446.817