Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30311g00006 ATGAGACCTAAAATGGAGGCAACAAAGGAAAAATGCTGGAGAATGGAAGTCGAGGAGAATCTGAAGCGCCTCCAATCTCTTCAGTTCGGCGCCGACCACGCCCTCTCCACCCAGGACTTCTCCTCCGCCTATGTCCTCGCCCTCCGCCTCCTCGGCTTCCTCGACTCCCACTCCCATTCCGACGTCGACGAAGCCTTCCTTCACCCTATTCGCCGCCAAACCGTCTCCACTCTCGCCTCCGCTCGCCGATCACTCACTCCTGATTCCGATCGCCTAGCTTTTGAACAAGCAAAGAAGCCTCAGGGGCGCGTTTTTTCCACATCAGGTGAAATTGACATTGATAAGATCCGCAAGTCGAAGTACTTTCGAGCTCTTCTCGCGCAACCTGATGAAATTGACGAGAAACAGTTGGGTGAACAAATTGAGAAGCAAGACAAAGCGTGCGAGAAGGCGTCAAAGGAAATGGTGCAAGCTAAGCTTACATTGGTGTATGGGAAGAGTGCGTTGAGGAATGATAATGCTACCAAGAGCTTTCTCAATTTGAAGGATAATGGCTCTGAGGAATGCGTAGTTGTTGAGAGGCCTCAATTTCATAACAGCCATACAAAGGGTTCTGCTGTTTCTTCTTTCTTGCAGGTTGAAGAGGAAGAAAGAATGAACTCTTTTGGGAAGAAACGTGGGCATATGGAAATTAATAATAGTCCCAAAGTTGGTTATTCGAGGTCACCTTCAAGCAAGGAGGATGTTAATCCTGAAGTTTCTGGCAATGGATTTGTTACTGCTAGAGCCAAATTGGAAATGGAAACAAGGCAAAAGAGAGGAGGAGTTGGCTCACCCAACGCACCTGTATCCCCACAAGGCGATAACAATCCTTCCAATAGGTTATATAGTGGGAGATCATATGGCATTTCACGGCGTGGCTTCCGTGGTAATTTTGTTCCACCCATTAAATCAAATGGGAGTAATGCTGGAAATGTGACTTCACGAATTGCCGGAAAGGGAGATGATTCTTTAGATGACTCTACCAAAAGATGTTTGGAAATGCTGTGTGGACCTGATGGCGAGCTTCCTGAGAAGTTGAGGAATTTGGAACCTCGCCTTATCGAGCATGTTAGTAATGAGATTATGGACAGAGATCCTAATGTCCGTTGGGATGACATTGCTGGGTTGGAGCACGCCAAGAAATGTGTCACTGAAATGGTTATATGGCCTCTGCTACGTCCAGACATATTTAAGGGATGCAGGTCACCTGGTAGAGGTTTGCTCTTATTTGGTCCACCGGGAACTGGTAAAACAATGATTGGCAAAGCAATAGCCGGGGAGGCAAAGGCAACTTTCTTTTACATATCTGCAAGTTCATTGACAAGCAAATGGATTGGTGAAGGCGAAAAACTAGTACGAGCCCTTTTTGGAGTTGCCAGTTGTCGTCAGCCAGCAGTAATTTTTGTTGATGAGATAGATTCACTCCTCTCTCAGCGCAAGTCAGATGGTGAGCACGAATCAAGTAGAAGGCTTAAGACACAATTTCTCATAGAAATGGAAGGCTTTGATAATGGCAGCGAACAAATTCTACTCATAGGGGCAACAAATCGTCCCCAAGAGCTTGATGAAGCAGCAAGAAGGAGACTTACCAAAAGACTATATATCCCCCTACCCTCCTCAGAGGCTAGAGCTTGGATTATACGTAACCTACTAGAGAAAGATGGATTATTCAATCTATCAAGGGAGGAATTAGGTTATTCAGGATCTGACATGAAAAACTTAGTGAAGGATGCATCTATGGGTCCCCTAAGAGAGGCACTAAAACAGGGTATAGAAATTTCAAAGTTGAAGAAGGAGGATATGAGGCCAGTAACCCTTCAGGACTTCGAGAATGCCCTAAAAGAAGTGAGGCCTTCTGTCTCCACTAACGAACTTGGCACTTACGAAGAATGGAATATGCAGTTTGGAAGCCTATCACTGTAG 1965 0.457 MRPKMEATKEKCWRMEVEENLKRLQSLQFGADHALSTQDFSSAYVLALRLLGFLDSHSHSDVDEAFLHPIRRQTVSTLASARRSLTPDSDRLAFEQAKKPQGRVFSTSGEIDIDKIRKSKYFRALLAQPDEIDEKQLGEQIEKQDKACEKASKEMVQAKLTLVYGKSALRNDNATKSFLNLKDNGSEECVVVERPQFHNSHTKGSAVSSFLQVEEEERMNSFGKKRGHMEINNSPKVGYSRSPSSKEDVNPEVSGNGFVTARAKLEMETRQKRGGVGSPNAPVSPQGDNNPSNRLYSGRSYGISRRGFRGNFVPPIKSNGSNAGNVTSRIAGKGDDSLDDSTKRCLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDNGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIIRNLLEKDGLFNLSREELGYSGSDMKNLVKDASMGPLREALKQGIEISKLKKEDMRPVTLQDFENALKEVRPSVSTNELGTYEEWNMQFGSLSL 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30311g00006 654 Gene3D - 380 646 IPR027417 -
Stsc30311g00006 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 635 IPR027417 -
Stsc30311g00006 654 Pfam ATPase family associated with various cellular activities (AAA) 421 551 IPR003959 GO:0005524|GO:0016887
Stsc30311g00006 654 MobiDBLite consensus disorder prediction 226 255 - -
Stsc30311g00006 654 MobiDBLite consensus disorder prediction 282 299 - -
Stsc30311g00006 654 PANTHER AAA DOMAIN-CONTAINING 174 651 - -
Stsc30311g00006 654 FunFam Fidgetin like 1 552 630 - -
Stsc30311g00006 654 Gene3D - 552 630 - -
Stsc30311g00006 654 Pfam Vps4 C terminal oligomerisation domain 616 650 IPR015415 -
Stsc30311g00006 654 SMART AAA_5 417 553 IPR003593 GO:0016887
Stsc30311g00006 654 Coils Coil 134 161 - -
Stsc30311g00006 654 MobiDBLite consensus disorder prediction 269 338 - -
Stsc30311g00006 654 MobiDBLite consensus disorder prediction 235 251 - -
Stsc30311g00006 654 FunFam Fidgetin-like 1 380 562 - -
Stsc30311g00006 654 ProSitePatterns AAA-protein family signature. 523 542 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30311g00006 Stsc-Chr30311 72679 77836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30311g00006 336 652 Calmodulin-binding Proteins AT3G56690 31.231 1.84e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30311g00006 K22766 - gmx:100776024 1015.37