Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30311g00004 ATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATTTTGGAAAAGGTCCCATCGGAGCGGCAAATAATGCTTTTCTCTGCGACCATGCCGGGTTGGGTGAAGAAATTGTCAAGAAAATATCTGAACAATCCGTTGACAATTGATTTGGTCGGTGACGAAGAAGAAAAACTTGCTAATGGGATCAAACTTTATGCTATGTCAGCCACTAACACTTCAAAGCGGACAATTCTTTCTGATCTTGTAACTGTAAGTTTACTGAAATATCTTGATTATTACCATGTCAGCGGTTGGTCTATACAAGAAATATCTTGA 315 0.3968 MLAVGFEEDVEVILEKVPSERQIMLFSATMPGWVKKLSRKYLNNPLTIDLVGDEEEKLANGIKLYAMSATNTSKRTILSDLVTVSLLKYLDYYHVSGWSIQEIS 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30311g00004 104 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 48 IPR014001 -
Stsc30311g00004 104 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 1 83 - -
Stsc30311g00004 104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 48 IPR027417 -
Stsc30311g00004 104 Gene3D - 1 52 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30311g00004 Stsc-Chr30311 42777 43442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30311g00004 1 81 Eukaryotic Initiation Factors Gene Family AT1G72730 34.568 1.08e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30311g00004 - - itr:116006582 149.828