Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30311g00002 ATGCCTCCAAAAAAGAAGAAGAACAACGCTTCATCATCTTCTTCTTCTACTTCAAAGAAGCTTAACCCTCAACCTTCCAAGTTCGGCATCCAGCATTTCTTTGATCGCCATACACAGAACAATGCTCTCCTCGCCTCCCAAAAGCTCCAAACCAACAATGCTTCCGACTCTGCTGCTAAACCAGTTTCTATTCCTCTTCCGGCCGAAACGAGTGACCTGAGTTCCAGCACTGCTGTGCAGGTGACTCCCCAACTGTTGCCGCGAAAACCTAGCAATGGCAAGAGCAATACCAGTTATAATGGTAACCATGATAATAGAAGTAACAGTGAACATTCCCAGAATACTCCTACTGAGAATTCGGTGGTGACGGTTGCGAATGCGATGGAAGATAGCATGTCTGAGGTGTCCCCAGAGATTTCTAAAGCTATGCCGCTTAAACGCTTCAAATTCTCACCTGGAATGACTCAAGATTATGGGGTTGAGGAGGTCACATGGAAGATATCTCCAGTCAATGAAAGACTCCAAGCTGTTTCTAAACATGTGCCAAATGTTATTAAAGAGTTGGCCGACTCTTCAAGACTCAACTTGTTGCCATTTCGTAGCTGCTCAGAAGATAAGACTTTTCTGGATAAAGATGACAAGGTTGGCGAATTGCTTACTTCACCAACTCCCGAGGCTTCTGCAAAAGTTCTACCTTCAATGAGTAAATTAGGCTTGAAAAGGATAAACCCAGAACAAAGTGTGGATTTTGACACCAACCCAACTACTCTGAGCTACTCTGGATTAGCTAGCGGACAGAGTCCCTTCAGGACTCCACCATCTTTGTCTCATTGCCCCGATAAGGTGCATCCTGTTAATGATATTCAATGCACTGTACCATCTGATCAACTTTATCACAGACAGCACAAAAAGACTTTGCTTGAACTGTTGGATCAAGTTGAAGATGCCATTGCTGTTGACGATGCTATTGTTTGTAACAATGGAACTGATTCTTTAAAATCTTGTGACGGCATTACTGATGAGATCCCTGTTAGAGCCGACCATGCTGTAGTAAGGACAAGATCACATATATCTAAACAGGAGGTGGTTGCTTTTTCTAGTTCTAATTATTTGGTTTTGCAGGTGTCTGAAAATTGTCGGTCTGCTGATTCATCTGCTGCTGATGCTCGATCCCCATACAAGGTGCTTCGTATACTAAATGAGCAAACTGGAGAAGAGCGGACAGTAAACTTGAGGGATGAGTGGTTTTCCAGTGTAATTGCACCTGGAGATACTGTAAACATAATTGGTCAATTTGGTGAAGGAGGAAGTTGTGATATAAGCCATGATAATAATATCTTGATTGTGCACCCAGACATTCTGCTGTCTGGAACAAGGGTTGCTGGCAGTTTTGGTTGCCCTAGGAGAACTGTCTTAGATGAGAGGCTAAAAGGCAATGAGTACTCTACTGCAGCATTGACTGGAACCTTGCTTCACCAAATTTTTCAGAAGACAATCCATCTATTGACTTCTTGGAAGGTTACGCAGAAGTGGTATTACTTAGGAACATTGAGAGTCTTAAATGAAAGTGATGTTCGGAAAACCTTGATTAATGCTGTCCCAAGAATACTGAGTTGGATTTTACGGTTCACAAATAAGGAGGAAAATCAAGATCATAATGTTTGCTTCGGATTTCACGACAGGCCTAAGAAAGTTGGCATATCTGAGGTAATTGATATTGAAGAGATGGCATGGGCTCCTAAATATGGTTTGAAAGGGATGATTGATGCTTCAGTCAGAGTGACAGTACAATCAACAAAAGATGAACTAGAGGAGAAGATTATGCCAGTAGAGTTCAAGACCGGGAAATCACCAGCTAGCCAGTCATCAGCAGAACATAATGCTCAAGTAATCTTATACACTCTTCTGATGTCTGAAAGGTATCAAAACACTATTGATTCTGGTCTTCTATATTATCTCCAATCAGATCAGACACAGGGCATTGTGGCTCAAAGATCTGACTTAGTTGGCCTAATAATGCGACGAAACGAGCTAGCAAGTGATATTCTTAAGGCATTAACCTTGCAACAACTTCCACCAATGTTACAGAGTCCTGGCATTTGCAGAGGTTGTCGCCATCTTAATGTTTGTAGCATTTATCACAAGGCACATGGTGGAAGCACAAAGAGCAGTGGATTGGACGATGTATTTGACTCTCTTACTAATCACCTTACATCTTCCCATTCCAAGTTCCTCTGCCATTGGGATCGGCTGATTGACTTGGAAGCTAAGGAGACTGAGCTTTTAAGGAAAGAGATGTGGCGATCACATAGTTTAAAGGCTCCAAACTGTGGTAGCCTTTCTTCAATTGTTCTCGATGGTTCACATGGGATTCCTCACCAGAAATCTCTCAAAGATAATCTCTTTGTTTATCGTTTTGTAAGACAAGAAAGTTGTCCCTCTGGAGTTTCTGATGGCGATCACTGTAGTACCTATTCAACAAATTTAGATCTAACACTTGGAAGTGGAGACTTTGTGATATTGAGTAATGAGTCTAGCGGGCAAACTGTTGCAAAAGGGGTAATCTCAGATATTAGCCAGATTCATGTATCTGTTTCCTTTTCGAAACGCTTACGAATTCCAGGAAGATGCTCCACTACACATGATCTCCTTCAACAAGTTTGGAGAATTGACAAGGATGAATTTGTGACTTCATTTGCAATTATGAGGTTTAATCTTGGGCAACTTTTTCTACAAAATGATCGGAGTACTCATCTGCGGAGGATGATTGTTGACCTTGAGGCTCCTAGATTTGACTGTGAATCTATAGTCAGCCAGGATCCCGCAATATCATATGTACGGTCAAAAAAATCTTTGAATGATGATCAATGTAAAGCAATTCTCAAGATACTTGCAGCAAAAGATTATGCGCTTATATTAGGAATGCCTGGAACAGGGAAGACTTCTACCTTGGTTCATGCTGTGAAAGCCTTGTTGGAAAGGGGCTCTTCCATTTTGCTGACAGCCTATACAAACTCTGCGGTTGATAATTTACTCATGAAATTAAAAGCACAGGATGTTGATTTTGTTCGCATTGGAAGACCAGAAGCAGTGCATGAGGTGGTCAGAGGACACTGCCTTTCAGCAACAAATATACAAAATGTTGAAGATATCAAAATAAGGTTAGGTCAAGTCAGAGTTGTTGCAGTTACTTGTCTTGGCATTTCCAGTCCCTTGCTTGCTAACATGAGATTCGATGTTTGCATTATGGATGAAGCTGGACAGACAACCCTACCAGTGTCCTTGGGCCCTCTAACATTTGCTTCGGTGTTTGTACTTGTTGGGGATCATTATCAATTGCCTCCACTTGTCCAGAGCACAGAGGCCCAAGAGAATGGCATGGGCATAAGTTTGTTTTGTAGGCTCTCCGAAACACATCCAGAGGCAATTGCAGAATTACGGAGCCAGTACCGGATGCGTCAAGGCATTATGGACCTGTCAAATGCCTTGATATATGGTGACAGGTTGAGGTGTGGTTCATCTGAAATAGCTAATGCAGCACTTGAGTTTTCTAATTTAAAATGTGGCTTGCCTTGGCTAGAAGATGTTTTAAATCCTTCCAGGCCAGTGATTTTTATTGATACTGACATGTTACCTGCTTTGGAGGTAAGAGATCAGAAGACTGTCAATAACCCAGTTGAAGCTCAAATAATTGCCGAGGTTGCAATGGAATTGGTTAAAAATGGAATTGTAGGAGAGCAGATTGGTGTTATTACCCCTTATAATTCACAGGCAAACCTCATCCGGAAAGCAGCTTCTGACACTTCAATGGAGATACATACCATTGACAAATATCAGGGTAGAGATAAGGATTGCATATTAGTATCTTTTGTAAGATCTAGTGAGAATCCAATGAACCTTGCTGCTTCTCTGCTTGGAGACTGGCACAGGATAAATGTGGCTCTCACTCGCGCTCGGAAAAAGTTGATCATGGTGGGGTCTCGTAGAACTCTTTCAAAGGTTCTGCTACTGAAGCTTCTCATTAAGAATGTGGAGGAACAATGTGGAATTATAAGCGTTTCTAAGAAGGATACCGTTCCAAATGGTCAGCTCCGAAAATGTTCTCAAATGGGTTGA 4116 0.4184 MPPKKKKNNASSSSSSTSKKLNPQPSKFGIQHFFDRHTQNNALLASQKLQTNNASDSAAKPVSIPLPAETSDLSSSTAVQVTPQLLPRKPSNGKSNTSYNGNHDNRSNSEHSQNTPTENSVVTVANAMEDSMSEVSPEISKAMPLKRFKFSPGMTQDYGVEEVTWKISPVNERLQAVSKHVPNVIKELADSSRLNLLPFRSCSEDKTFLDKDDKVGELLTSPTPEASAKVLPSMSKLGLKRINPEQSVDFDTNPTTLSYSGLASGQSPFRTPPSLSHCPDKVHPVNDIQCTVPSDQLYHRQHKKTLLELLDQVEDAIAVDDAIVCNNGTDSLKSCDGITDEIPVRADHAVVRTRSHISKQEVVAFSSSNYLVLQVSENCRSADSSAADARSPYKVLRILNEQTGEERTVNLRDEWFSSVIAPGDTVNIIGQFGEGGSCDISHDNNILIVHPDILLSGTRVAGSFGCPRRTVLDERLKGNEYSTAALTGTLLHQIFQKTIHLLTSWKVTQKWYYLGTLRVLNESDVRKTLINAVPRILSWILRFTNKEENQDHNVCFGFHDRPKKVGISEVIDIEEMAWAPKYGLKGMIDASVRVTVQSTKDELEEKIMPVEFKTGKSPASQSSAEHNAQVILYTLLMSERYQNTIDSGLLYYLQSDQTQGIVAQRSDLVGLIMRRNELASDILKALTLQQLPPMLQSPGICRGCRHLNVCSIYHKAHGGSTKSSGLDDVFDSLTNHLTSSHSKFLCHWDRLIDLEAKETELLRKEMWRSHSLKAPNCGSLSSIVLDGSHGIPHQKSLKDNLFVYRFVRQESCPSGVSDGDHCSTYSTNLDLTLGSGDFVILSNESSGQTVAKGVISDISQIHVSVSFSKRLRIPGRCSTTHDLLQQVWRIDKDEFVTSFAIMRFNLGQLFLQNDRSTHLRRMIVDLEAPRFDCESIVSQDPAISYVRSKKSLNDDQCKAILKILAAKDYALILGMPGTGKTSTLVHAVKALLERGSSILLTAYTNSAVDNLLMKLKAQDVDFVRIGRPEAVHEVVRGHCLSATNIQNVEDIKIRLGQVRVVAVTCLGISSPLLANMRFDVCIMDEAGQTTLPVSLGPLTFASVFVLVGDHYQLPPLVQSTEAQENGMGISLFCRLSETHPEAIAELRSQYRMRQGIMDLSNALIYGDRLRCGSSEIANAALEFSNLKCGLPWLEDVLNPSRPVIFIDTDMLPALEVRDQKTVNNPVEAQIIAEVAMELVKNGIVGEQIGVITPYNSQANLIRKAASDTSMEIHTIDKYQGRDKDCILVSFVRSSENPMNLAASLLGDWHRINVALTRARKKLIMVGSRRTLSKVLLLKLLIKNVEEQCGIISVSKKDTVPNGQLRKCSQMG 1371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30311g00002 1371 FunFam DNA replication helicase Dna2 886 1149 - -
Stsc30311g00002 1371 Gene3D - 456 711 IPR011604 -
Stsc30311g00002 1371 MobiDBLite consensus disorder prediction 68 118 - -
Stsc30311g00002 1371 Pfam Domain of unknown function DUF83 598 711 IPR022765 -
Stsc30311g00002 1371 MobiDBLite consensus disorder prediction 1 34 - -
Stsc30311g00002 1371 Pfam AAA domain 952 1042 IPR041677 GO:0004386
Stsc30311g00002 1371 Pfam AAA domain 1055 1119 IPR041677 GO:0004386
Stsc30311g00002 1371 PANTHER DNA2/NAM7 HELICASE FAMILY 147 1347 IPR045055 -
Stsc30311g00002 1371 CDD DNA2_N-like 456 682 - -
Stsc30311g00002 1371 Pfam DNA replication factor Dna2 401 594 IPR014808 -
Stsc30311g00002 1371 Pfam AAA domain 1129 1328 IPR041679 -
Stsc30311g00002 1371 FunFam DNA replication helicase Dna2 550 711 - -
Stsc30311g00002 1371 Gene3D - 891 1149 IPR027417 -
Stsc30311g00002 1371 CDD DEXXQc_DNA2 951 1151 IPR026851 GO:0017116
Stsc30311g00002 1371 Gene3D - 1150 1358 IPR027417 -
Stsc30311g00002 1371 MobiDBLite consensus disorder prediction 54 118 - -
Stsc30311g00002 1371 MobiDBLite consensus disorder prediction 1 25 - -
Stsc30311g00002 1371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 950 1335 IPR027417 -
Stsc30311g00002 1371 CDD SF1_C_Upf1 1152 1330 IPR047187 -
Stsc30311g00002 1371 FunFam DNA replication helicase 1150 1361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30311g00002 Stsc-Chr30311 3858 20794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30311g00002 1 1093 Core DNA Replication Machinery Family AT1G08840 51.653 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30311g00002 K10742 - gmx:100799415 1672.14