Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30310g00013 ATGGATGCACAGGCCAAGAAAAAGGCATATTTTCGTGCTAAATTGGCCCAGCAGAAAGAAAAGCGTATAGATTCTCCCCTTGTAAGGTATAATGATTCTCATCAAGCTGTTTGTCGGGTTTGTGATGTTGTTCTGAAGTCTGAATCAATATGGGATGCACACCAAGTCTCCCGTAAGCATCGCGAGGCAATTGATAACCTTAAAGCCAATGCAGCTGGATTAACTCAGCAAAACAATGCAAAGCCGGCTATTGGTAACAGTTTCCCCAAGGCCAAACCTGAACAGCCTTCCGAATCACTATCGAAGAAGCCTGAACCTTCAAAAGAAGTTCCTAAAGCCCAGTCATCGTCTGTGCTTCCGCCAAATTTTTTTGATGACAGTGCAAGGAAAACTGAAAAGAAATCATCTGATTCAGGAAGAAATGTGGGAGTCTCTATTCAAAATCAGGTGTCAAAATCGGAGGAGAGAAGTCATTTTCATGGTAATGATGCTGCGCCATCAAAGATTAGTCAAGAAAAAGCAGAGACTAGGCAGACCTCAGCCAAAACTTCTGATGCAGAGGACAATCAAGCCAAAGGCGCACTGCCTGAAGGCTTTTTTGACAACAAGGAAGCAGATTTGCTGGCACGTGGCATTAAGCCTGTGAAGCCAGATGTCAAAGATGAGTACAAGGAGTTTGAGAAGCTGATTCAAGAGGACTTGCAGCAGGTTGATAACCGATTGGAAGAAGAAGAGATTGATGCTGCTGAAATGATAGAAGAAGCTGAATCCGTTGAGCAAAAGGTCTTGAGGGAGAGAGTGGAAATGATGAAGAGGAGGAGGTTGGAGCTGAAGGCAGCAAAGTCAGCAAAGCGTATTAAAACTTCTGAGCCTGAAACCAAGGAGGAGTCAAGGCATGAAGAAGAGTCATTAAGTGATGATGAAAGTGGTGAGAATTTTGCTGTGGATTGGAGAGCACAACACTTGTGA 969 0.4386 MDAQAKKKAYFRAKLAQQKEKRIDSPLVRYNDSHQAVCRVCDVVLKSESIWDAHQVSRKHREAIDNLKANAAGLTQQNNAKPAIGNSFPKAKPEQPSESLSKKPEPSKEVPKAQSSSVLPPNFFDDSARKTEKKSSDSGRNVGVSIQNQVSKSEERSHFHGNDAAPSKISQEKAETRQTSAKTSDAEDNQAKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEFEKLIQEDLQQVDNRLEEEEIDAAEMIEEAESVEQKVLRERVEMMKRRRLELKAAKSAKRIKTSEPETKEESRHEEESLSDDESGENFAVDWRAQHL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30310g00013 322 MobiDBLite consensus disorder prediction 138 152 - -
Stsc30310g00013 322 MobiDBLite consensus disorder prediction 71 198 - -
Stsc30310g00013 322 PANTHER UNCHARACTERIZED 1 322 IPR040050 GO:0003676|GO:0005681|GO:0008270
Stsc30310g00013 322 Coils Coil 57 77 - -
Stsc30310g00013 322 MobiDBLite consensus disorder prediction 169 187 - -
Stsc30310g00013 322 MobiDBLite consensus disorder prediction 279 322 - -
Stsc30310g00013 322 Coils Coil 227 268 - -
Stsc30310g00013 322 Gene3D Classic Zinc Finger 33 69 - -
Stsc30310g00013 322 Pfam Zinc-finger of C2H2 type 38 60 - -
Stsc30310g00013 322 MobiDBLite consensus disorder prediction 279 305 - -
Stsc30310g00013 322 SUPERFAMILY beta-beta-alpha zinc fingers 31 70 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30310g00013 Stsc-Chr30310 90200 94358 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30310g00013 1 322 C2H2 Transcription Factor Family AT3G02860 52.280 4.19e-92 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30310g00013 K13104 - gmx:100808515 393.66