Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30310g00004 ATGGTTCTTTCGGAAACCGCTACCGGCAGCGATGTCTCCGTCCACTCTACCTTCGCCTCGCGCTATGTCCGCGCCTCCCTTCCCAGGTTTAGGATGCCGGAGAATTCGATACCGAAGGAAGCAGCGTATCAGATAATAAACGATGAGCTGATGCTGGACGGGAATCCAAGGTTGAATCTGGCGTCGTTCGTGACGACGTGGATGGAGCCTGAATGTGACAAGCTCATCATGGCTGCCATTAACAAGAACTACGTTGATATGGACGAGTACCCTGTCACCACTGAGCTCCAGAACAAATTGTTGAAAGTGGCCCATGGGGATCATGCTTCTTCAAAAACAACTGAAAAAGCCGTGTAG 357 0.5098 MVLSETATGSDVSVHSTFASRYVRASLPRFRMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNKLLKVAHGDHASSKTTEKAV 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30310g00004 118 FunFam Glutamate decarboxylase 1 65 - -
Stsc30310g00004 118 Gene3D - 66 109 IPR015421 GO:0003824
Stsc30310g00004 118 Gene3D - 1 65 - -
Stsc30310g00004 118 SUPERFAMILY PLP-dependent transferases 15 104 IPR015424 -
Stsc30310g00004 118 PANTHER GLUTAMATE DECARBOXYLASE 1 116 IPR010107 GO:0004351|GO:0006536|GO:0030170
Stsc30310g00004 118 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 102 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30310g00004 Stsc-Chr30310 22752 24072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30310g00004 1 118 Calmodulin-binding Proteins AT5G17330 79.832 2.35e-62 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30310g00004 K01580 - pvy:116131519 194.897