Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30310g00003 ATGGACGTCGAGTTCAAGGACATTAACGGTAACCACGTCGGCGTGGACTTAAATAGCATGGTTTCGGCGAAGGTTTTCGACTTGGGATTGATCAATGTCGATCTCAAAAGCGGTGACATCGTGAACGCGTGGATCGAGTTCGATGGATCAACAACGGTTTTAACCGTTTCGGTCTCTTACTCGAATCTGAAACCCAAGGACCCCATTTTGACGATGAATCTTGACGCCGATCGATACTTGAACGATTTCATGTATGTAGGGTTTTCTGGCTCTACGCAGGGAAGCACCGAGATTCACACTGTTAGTTGGTGGAGCTTTAGCTCTTTCTTTCCGCCGTCTTCGTCGGCGGCGGCGGCGCCGCCACCGCCTGCGGTTACTCTGATGAACCCAGGGGCTAATTCAGCTGGGGGTTCCTCATCGCTGTCTTCGCCGCCGTCGATTGCGCCTTCAGTGGCACAGAAGGAGAGTAAGTCGTCTTCTTGCCACAATGGTTTGTGTAAAGAAAATTTGGGTGCGGTTGCTGGTGTTGTTACTGCTGGTGCTTTTGTTCTTGCTTTATTTGCTGGTGCTTTGATTTGGGTTTATTCTAAGAAATTCAAGCGTGTTAAGAAATTGGATACCCTTGGTTCTGAGATTATTAAGATGCCTAAGCAGTTCAGTTACAAGGAATTGAAGGCTGCTACTAAGTGTTTCAATGCTAATAGGATCATTGGTCATGGTGCTTTTGGAACTGTGTATAAGGGTGTTATGCCTGAGAATGGCGAAATTGTTGCGGTCAAGAGGTGTAGCCACAGTAGTCAGGGTAAGAATGAGTTCTTGTCTGAGTTGTCTATAATCGGAACCCTTCGGCACCGGAATCTTGTTAGGCTTCAGGGTTGGTGTCATGAGAAAGGCGAGATTCTGTTGGTGTATGACTTGATGCCCAATGGGAGTTTGGATAAGGCTTTGTTCGAGGCCAGGATGCCTCTGCCGTGGAGTCACCGGAGAAAGATTTTGTTGGGGGTGGCATCTGCATTGGCCTACTTGCATCAAGAGTGTGAGAATCAGGTTATTCATAGGGACATTAAGACTAGTAACATAATGTTGGATGAAGGGTTTAATGCGAGGTTGGGTGATTTCGGTTTGGCAAGGCAAACTGAGCATGATAAGTCTCCGGATGCCACGGTGGCAGCCGGAACAATGGGGTACTTGGCACCCGAGTATCTCCTTACTGGCAAAGCTACTGAGAAAACTGATGTGTTTAGTTACGGCGCGGTGGTCCTTGAGGTTGCTAGTGGGAGAAGACCAATAGAGAAAGATGCTACTGGGACCGGAAAAGGCGGTGTTAGTAGCAATTTGGTAGAATGGGTTTGGACTTTGCATAGGGAAGGGAGGCTGCTAATGGCGGCAGATCCGAGACTCGAGAATGAATTCGATGAAGCAGAGATGAGGAAGGTGCTTATGGTTGGGCTAGCTTGTTCGAACTCGGATCCATCGGCTCGGCCTTCGATGAGGAGTGTGGTTCAGATGCTGGTTGGTGATGCTGAAGTTCCTATTGTCCCAACGACGAAACCAAATACAGGTTTAAGTACCTCACACTCTCAACTCTTATTGAGCTTGCAAGATAGTGTATCTGACATTGATGGAATAATCACCATCTCTACCTCAACTTCAGAGAACAGCTTCAATGGTATGGATATAGTCTGA 1686 0.4757 MDVEFKDINGNHVGVDLNSMVSAKVFDLGLINVDLKSGDIVNAWIEFDGSTTVLTVSVSYSNLKPKDPILTMNLDADRYLNDFMYVGFSGSTQGSTEIHTVSWWSFSSFFPPSSSAAAAPPPPAVTLMNPGANSAGGSSSLSSPPSIAPSVAQKESKSSSCHNGLCKENLGAVAGVVTAGAFVLALFAGALIWVYSKKFKRVKKLDTLGSEIIKMPKQFSYKELKAATKCFNANRIIGHGAFGTVYKGVMPENGEIVAVKRCSHSSQGKNEFLSELSIIGTLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFEARMPLPWSHRRKILLGVASALAYLHQECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYLLTGKATEKTDVFSYGAVVLEVASGRRPIEKDATGTGKGGVSSNLVEWVWTLHREGRLLMAADPRLENEFDEAEMRKVLMVGLACSNSDPSARPSMRSVVQMLVGDAEVPIVPTTKPNTGLSTSHSQLLLSLQDSVSDIDGIITISTSTSENSFNGMDIV 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30310g00003 561 ProSitePatterns Protein kinases ATP-binding region signature. 237 260 IPR017441 GO:0005524
Stsc30310g00003 561 FunFam L-type lectin-domain containing receptor kinase VIII.1 195 306 - -
Stsc30310g00003 561 Gene3D Transferase(Phosphotransferase) domain 1 307 510 - -
Stsc30310g00003 561 Gene3D - 1 143 - -
Stsc30310g00003 561 SMART serkin_6 231 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30310g00003 561 ProSiteProfiles Protein kinase domain profile. 231 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30310g00003 561 CDD STKc_IRAK 237 504 - -
Stsc30310g00003 561 Pfam Legume lectin domain 4 111 IPR001220 GO:0030246
Stsc30310g00003 561 SUPERFAMILY Concanavalin A-like lectins/glucanases 2 252 IPR013320 -
Stsc30310g00003 561 SUPERFAMILY Protein kinase-like (PK-like) 213 527 IPR011009 -
Stsc30310g00003 561 Gene3D Phosphorylase Kinase; domain 1 194 306 - -
Stsc30310g00003 561 FunFam L-type lectin-domain containing receptor kinase VIII.1 307 522 - -
Stsc30310g00003 561 PANTHER - 4 514 - -
Stsc30310g00003 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 350 362 IPR008271 GO:0004672|GO:0006468
Stsc30310g00003 561 Pfam Protein kinase domain 232 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30310g00003 Stsc-Chr30310 15715 18106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30310g00003 1 543 Receptor kinase-like Gene Family AT3G53380 70.144 0.0 781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc30310g00003 Pkinase 1.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30310g00003 - - gmx:100810624 860.522