Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30309g00017 ATGGATAGTCATCATACACAAAAATGGTTAGAAAGGGCGAAGCCATTCATAGGTGTGATTTTCTTGCAGTTTGGATTCGCCGGCATGGATGTTCTATCCAAGGCCGCACTCAACAAAGGAATGAGCAATTATGTTCTGGTTGTATATCGCCATGTTGTTGCCTTCGTTGTCATAACTCCTTTCGCATTAATTATCGATAAGAAAGTGAGGCCAAAGATGACATTTTCAATCTTGATGAAGATGGTGGCGTTAAGCATACTAGAGCCAGTTATTGATCAGAATTTATACTTTTTGGGAATGAAATACACAACTGCAACCTTTGCTGCTGCCATGACCAACATGCTTCCTGCCATTACCTTTGTCTTGGCCTGCATTCTTAGGCTTGAGAAGGTGAAAATAAGAAGTGTACGGAGTCAAGCAAAGGTGGTTGGGACTCTAGCAACTGTGGCAGGTGCCATGGTTATGACACTGATTAAAGGCCCAGAGCTCTTTGGGTTCCAAGGAAGCAATGCTCATAACCAGCACAATAATGGGGCTAACCTTCATGATGTCATTAAGGGTTCCATCATGATCACTATTGGCTGCTTTAGTTGGGCTTGTTTCATGGTTCTCCAATCTGTTACCCTAGAAGCTTACCCTGCTGAGCTTTCACTTACATCATGGATATGCCTGTTGGGAACAATTCAAGGTGGCATAGTTGGCCTCATTATGGAAAGAGCTAATCCTTCTGTTTGGACTCTTCATTGGGATACAAAACTACTTGCTGCTGCCTATAGCGGTATATTTTGCTCTGGACTGGCTTATTACATTCAAGGAGTAGTGATGAAAACCAGAGGTCCAGTCTTTGTAACAGCATTTAGTCCCCTCTGTATGGTCATTGTTGCTATCATGGGTTCAATTTTTCTTGCTGAGCAAATGTTCCTTGGAAGGGTGGTAGGTGCCATTGTGATTATTCTGGGGCTGTACATGGTGGTGTGGGGTAAAAGCAAAGACTATGACACACCAAATCCAACTATTCAAGACAACAGCAAACCCAAAAATCAGTTTCTTACTCAACAAGAGGAAAACATAGCTACAGATGAACAAGTATGA 1092 0.424 MDSHHTQKWLERAKPFIGVIFLQFGFAGMDVLSKAALNKGMSNYVLVVYRHVVAFVVITPFALIIDKKVRPKMTFSILMKMVALSILEPVIDQNLYFLGMKYTTATFAAAMTNMLPAITFVLACILRLEKVKIRSVRSQAKVVGTLATVAGAMVMTLIKGPELFGFQGSNAHNQHNNGANLHDVIKGSIMITIGCFSWACFMVLQSVTLEAYPAELSLTSWICLLGTIQGGIVGLIMERANPSVWTLHWDTKLLAAAYSGIFCSGLAYYIQGVVMKTRGPVFVTAFSPLCMVIVAIMGSIFLAEQMFLGRVVGAIVIILGLYMVVWGKSKDYDTPNPTIQDNSKPKNQFLTQQEENIATDEQV 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30309g00017 363 Pfam EamA-like transporter family 18 155 IPR000620 GO:0016020
Stsc30309g00017 363 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020
Stsc30309g00017 363 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 157 - -
Stsc30309g00017 363 PANTHER WAT1-RELATED PROTEIN 14 332 IPR030184 GO:0016020|GO:0022857
Stsc30309g00017 363 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30309g00017 Stsc-Chr30309 105741 108668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30309g00017 1 363 Nodulin-like Gene Family AT2G37460 62.772 8.74e-171 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30309g00017 - - gmx:100806461 528.094