Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30309g00011 ATGGCGTTCTTTTCTGGAGCTCAGCGATTTCTTCGCCATTCTTCTTCAGTTTTGGCGCCCCACTTCACCTCCACTCGTCTCTCTTCAACTCTCACTTCCCCAAAACTCTTCGTCAGCGGTCTTTCAAGATTGACAACAGATGAAAAACTTACTGAAGCTTTTTCTCCTTTCGGCCAGCTGGTTGAAGCAAAGGTTATAACTGATAGAGCCTCTGGACGGTCAAAGGGATTCGGTTTTGTAACTTATGCGACCATAGAAGATGCCGAGAAGGCGAGAGCTGGAATGAATGCTAAATTTATTGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAGCCCAGACCTCCTCAGCAGCCACAGTCTCAGCCCTCTGATGCTGGTTTCACAGTTAACAAGACAGTTGGGTGGTGTGGTTGA 423 0.4681 MAFFSGAQRFLRHSSSVLAPHFTSTRLSSTLTSPKLFVSGLSRLTTDEKLTEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEDAEKARAGMNAKFIDGWVIFVDPAKPREPRPPQQPQSQPSDAGFTVNKTVGWCG 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30309g00011 140 FunFam RNA binding protein 21 134 - -
Stsc30309g00011 140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Stsc30309g00011 140 SUPERFAMILY RNA-binding domain, RBD 33 129 IPR035979 GO:0003676
Stsc30309g00011 140 MobiDBLite consensus disorder prediction 111 131 - -
Stsc30309g00011 140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 102 IPR000504 GO:0003723
Stsc30309g00011 140 SMART rrm1_1 35 108 IPR000504 GO:0003723
Stsc30309g00011 140 PANTHER NUCLEOLAR PROTEIN 8 23 139 - -
Stsc30309g00011 140 Gene3D - 23 133 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30309g00011 Stsc-Chr30309 64880 66556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30309g00011 36 125 Eukaryotic Initiation Factors Gene Family AT3G16380 38.710 4.09e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30309g00011 - - gmx:100804327 199.904