LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30309g00010	ATGACTTCGTTCCTGAAGCCTGAGAATGCCCTCAAAAGGGCTGAAGAATTGATCAATGTCGGGCAGAAGCAGGATGCTTTGCAGACCCTGCACGACCTTATTACCTCGAAAAGGTACAGGGCGTGGCAAAAGACGCTTGAAAGGATTATGTTCAAGTATGTGGAACTCTGTGTAGACATGCGCAAGGGGCGGTTTGCGAAGGATGGGCTCATTCAGTACCGTATCATATGCCAACAAGTGAATGTTAGCTCCCTGGAGGAGGTTATCAAGCACTTCATGCACCTATCCACTGAAAAAGCGGAACAAGCCCGTAGCCAGGCGCAGGCATTGGAGGAAGCTCTTGATGTTGATGATTTAGAGGCAGATAAAAGGCCAGAGGACTTGATGCTGAGCTATGTCAGCGGCGAGAAAGGAAAGGACAGATCTGATCGTGAGCTTGTTACCCCTTGGTTTAAATTTCTTTGGGAAACATATAGGACAGTGCTTGAAATCTTGCGCAACAACTCAAAGCTGGAAACTTTATATGCTATGACAGCTCATCGGGCTTTTCAGTTCTGTAAGCAATATAAGCGAACGACAGAGTTCCGTAGACTATGTGAAATCATAAGAAACCATTTGGCCAATCTTAATAAGTATCGTGATCAACGTGATAGGCCAGATCTTTCAGCTCCTGAGAGCTTGCAACTATATCTGGATACAAGATTTGAGCAACTGAAAATTGCAACAGAACTTGAACTTTGGCAGGAGGCTTTTAGATCTGTTGAAGACATACATGGACTGATGTGCTTGGTCAAGAAGACGCCAAAACCATCATTGATGGTTGTGTACTATGCTAAGCTGACAGAGATATTTTGGATAGGCTCAAGTCATCTATATCATGCATATGCGTGGTTCCGGCTATTCTTATTGCAGAAGAGCTTCAATAAGAATCTGAGTCAGAAGGATTTGCAATTAATAGCGTCATCAGTTGTCCTGGCTGCACTCTCAGTGCCTCCTCATGATCGCACTCATGGAGCATCCCATTTGGAACTGGAGCACGAAAAGGAGCGAAATTTGAGGATGTCAAACCTTATTGGGTTTAACATGGAAACCAAACCTGAAAGCAGAGAAATGCTTTCAAGATCATCACTTCTTGCTGAACTGGCATCCAAGGGTGTGATGTCTTGTGTAACTCAGGAAGTGAAGGATATTTTCAACATTTTGGAACATGAATTCCTTCCCTCAGATCTTGCAGTAAAAGTGCAGCCATTGTTGACTAAGATATCGAAGTTAGGGGGTAAGCTTTCCACTGCTTCATCTGTCCCAGAGGTGCAGTTGTCTCAGTACGTCCCTGCACTAGAGAAGTTAGCTACCTTGAGGTTGCTACAGCAGGTGTCTAATGTGTACCAGACAATGAAGATTGAGACCTTATCTGGCATGATCCCATTCTTCGATTTCTCTGTTGTGGAGAAGATTTCTGTTGATGCTGTTAAACAGAAGTTCCTTTCGATGAAAGTTGACCACATGAGAAATGTTATAATTTTCTGCAAGATGAGTCTTGAGTCTGATGGCCTAAGGGACCACTTGGCAAATTTTGCTGAACACTTGAATAAGGCTAGACAGATGATTTATCCTCCTGAGAAGAAACCTTCGAAAATTGGAACTTTGCTTCCAACTCTATCTGAAGTTGTTGCGAAGGAACATAAACGCCTTCTAGCTCGAAAATCTATTATTGAGAAGAGGAAAGAAGAACAAGAGCGGCAGCTTCTGGAAATGGAACGTGAGGAAGAGTCAAAGAGGTTAAGATTGCAGAAAATGAACGAAGAAGCTGAAAAATTGAGAGTTGCAACTGAATATGAGCAGAGAAAAAATCAGAGGCTCCGCAGAGAGATAGAGGAAAGAGAAAAGGAAGAAACTAGAGCTTTGTATGAGGAAGCGGAGAAGCGCAGCAGGGGTGGAAGGAAGGGGAAAAAGCCAATCATTGAGGGGGATAAAATTACAAGGGAAACCTTGATGGAGTTGACTTTGAATGAACAACTCCGAGAAAGGCAGGAAATGGAAAAGAAACTCCAGAAACTGGCAAAAACCATGGATTATTTGGAAAGGGCAAAAAGAGAAGAGGCTGCTCCCTTGATTCATGCCGCATATGTGAAGAGGCAAGACGAAGAGAAGATTCTTCATGAGCATGAGCAGCAGCAAGAGATTGAATTGAGTCGACAACGCCATGAAGGAGATCTCAAAGAGAAGGAGAGGCTAGCCAGAATGATGGGCAATAAAGAAATATATCAAGAGAAAGTTGTCAGTCGACGTCAGGCTGAATTTGACAGATTAAGGAAGGAAACAGAGGAGCGGATCTCTAGGATATTACAGTCCAGGAGACAGGACAGGGAAAGGTTGAGGAAGTGGAAGTATTATCTGAATGTGGAAGAAGAGAGGCAGCAAAAGTTGCGTGAGGAGGAAGAAGCAAGGAAGCGTGAAGAGGCTGAGAGGCGAAAGAAGGAGGAGGCTGAACGCTTAGCTAAATTGGAAGAGATAGCTGAGAAACAGAGGCAAAGAGAGCGTGAACTGGAAGAAAAGGAAAGGCAAAGGAGAGAAGCATTGTTGGGAAGAGCTGCCGAGCCAGCTTCAAGGCCTACCGAGGCTCCTGCACGCCCACTCGAGTCTGGAACTGCTGCTCCTGCTGCAGCTGCAGCAGCTGCTGTACCTGCCCCGGGGAAATATGTCCCTAGGTTCCGGCGTGAGAAAACTGATAGTGGAGCTGCTCCACCTGAAACAGACCGCTGGAATAACAATAGCAGCCGGCCGGATGGTGGTGATAAGTGGGGGCGTAGTGAAGATCGCAGACCAGCATTCGGTTCTGGTAGGTCATCTTCAACTTGGTCATCCTCGAGGAACCGCTGA	2880	0.4524	MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLETLYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCLVKKTPKPSLMVVYYAKLTEIFWIGSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKERNLRMSNLIGFNMETKPESREMLSRSSLLAELASKGVMSCVTQEVKDIFNILEHEFLPSDLAVKVQPLLTKISKLGGKLSTASSVPEVQLSQYVPALEKLATLRLLQQVSNVYQTMKIETLSGMIPFFDFSVVEKISVDAVKQKFLSMKVDHMRNVIIFCKMSLESDGLRDHLANFAEHLNKARQMIYPPEKKPSKIGTLLPTLSEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLRLQKMNEEAEKLRVATEYEQRKNQRLRREIEEREKEETRALYEEAEKRSRGGRKGKKPIIEGDKITRETLMELTLNEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIHAAYVKRQDEEKILHEHEQQQEIELSRQRHEGDLKEKERLARMMGNKEIYQEKVVSRRQAEFDRLRKETEERISRILQSRRQDRERLRKWKYYLNVEEERQQKLREEEEARKREEAERRKKEEAERLAKLEEIAEKQRQRERELEEKERQRREALLGRAAEPASRPTEAPARPLESGTAAPAAAAAAAVPAPGKYVPRFRREKTDSGAAPPETDRWNNNSSRPDGGDKWGRSEDRRPAFGSGRSSSTWSSSRNR	959

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30309g00010	959	Coils	Coil	798	858	-	-
	Stsc30309g00010	959	MobiDBLite	consensus disorder prediction	944	959	-	-
	Stsc30309g00010	959	FunFam	Eukaryotic translation initiation factor 3 subunit A	268	342	-	-
	Stsc30309g00010	959	ProSiteProfiles	PCI domain profile.	316	513	IPR000717	-
	Stsc30309g00010	959	Gene3D	-	351	495	-	-
	Stsc30309g00010	959	Gene3D	-	269	342	-	-
	Stsc30309g00010	959	Gene3D	UVR domain	217	268	-	-
	Stsc30309g00010	959	FunFam	Eukaryotic translation initiation factor 3 subunit A	352	494	-	-
	Stsc30309g00010	959	Coils	Coil	669	699	-	-
	Stsc30309g00010	959	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT	1	954	IPR027512	GO:0005852
	Stsc30309g00010	959	Pfam	PCI domain	373	508	IPR000717	-
	Stsc30309g00010	959	SMART	motif in proteasome subunits, Int-6, Nip-1 and TRIP-15	441	532	IPR000717	-
	Stsc30309g00010	959	FunFam	Eukaryotic translation initiation factor 3 subunit A	217	268	-	-
	Stsc30309g00010	959	Coils	Coil	561	642	-	-
	Stsc30309g00010	959	MobiDBLite	consensus disorder prediction	916	930	-	-
	Stsc30309g00010	959	Hamap	Eukaryotic translation initiation factor 3 subunit A [EIF3A].	1	934	IPR027512	GO:0005852
	Stsc30309g00010	959	Coils	Coil	93	120	-	-
	Stsc30309g00010	959	MobiDBLite	consensus disorder prediction	806	863	-	-
	Stsc30309g00010	959	MobiDBLite	consensus disorder prediction	806	959	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30309g00010	Stsc-Chr30309	57859	63791	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30309g00010	1	952	Eukaryotic Initiation Factors Gene Family	AT4G11420	69.970	0.0	1295

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30309g00010	K03254		-	gmx:100782598	1429.46