Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30308g00007 ATGGGCCAGTGCTACGGCAAGACCAATCCCTCGCCGGAAACTGACGCCGCCGCGATTCCAGCCTCCGACGACCTTCCTCCGTCGTCAGTCACTCCCTCGGTGAAGAACACTCCGGCGAGAGGTTTGTTGTCGCCGTGGCGGAGCCCTTACCCTCACGGAGGAGGCGTGACACCGTCTCCGGCTAGGGCGGCGACTCCGAGGAGGATTTTCCGGCGTCCTTTTCCGCCTCCGTCTCCGGCGAAGCATATTCGTGCGTCGTTGGCGAAGCGGCTGGGACGAGGCGCGGTGGCGGCGAGGGCGAAAGAGGGGACTATACCGGAGGAGGCGGCGGTGGCGGAGGAGGAGGCGGAGGAAGAGGAGGAGGAGCTGGATAAGAGGTTTGGATATGGAAAGAATTTTGGTGCAAAGTATGAGATTGGGAAGGAAATTGGGAAAGGGCATTTTGGTCATACTTGTTATGCAAGGTGTAAGAAAGGTGAATTGAAGGATCAAGCTGTGGCAGTTAAAATCATTTCCAAGTCTAAGATGACAACGGCGATAGCAATAGAAGATGTTCGGAGAGAGGTGAAGATCTTAAAAGCTCTATCTGGCCATAAGCATCTCATCAAATTTCATGATGCTTTTGAAGATGCCAACAATGTGTACATAGTGATGGAACTGTGTGAAGGTGGGGAGCTTCTTGACAGGATTTTGTCAAGGGGGGGAAAGTATCCGGAGGAGGATGCCAAGGCTATAGTTTTGCAGATTCTAAGCGTAGTTGCTTTTTGTCATCTTCAGGGTGTTGTGCACCGTGACCTAAAACCTGAGAATTTTCTGTTTACTTCAAAAAGTGAAGATGCTGATATGAAGCTTATCGATTTTGGTCTATCGGACTTCATCCGGCCAGACGAACGACTAAATGACATTGTTGGGAGTGCATATTATGTGGCACCGGAGGTACTTCACAGGTCATATAGTGTGGAAGCAGATATATGGAGTATTGGTGTGATTGCATATATCTTATTATGTGGAAGTCGACCGTTCTGGGCACGAACAGAATCTGGAATCTTTCGTTCAGTGCTCAGAGCTGATCCTAACTTCGAAGATATACCTTGGCCTTCAGTAACTCAAGAGGCCAAGGACTTTGTAAAGAGGCTCTTAAACAAGGACTACAGGAAAAGATTGACGGCTGTCCAAGCTCTAACTCACCCTTGGTTGAAGGACGAAAACCGCCCTGTACCTCTCGATATATTGGTTTATAAACAAGTGAAATCTTATATACACGCAACTCCATTCAGACGAGCAGCATTAAAGGCACTTTCAAAGGTTTTGACAGTAGACGAATTGCCCTATCTTCGGGCACAATTCAAATTGTTGGAACCAAACCGAGACGGCTACGTATCACTAGACAATTTCAAAATGGCCCTTATACGCCATGCAACCGATGCCATGAGGGAGTCAAAGGTTCTTGATATCATACACACGATGGAACCACTTGCATACAGAAAGATGGACTTTGAAGAATTCTGTGCAGCTGCAGTTAGCATATATCAATTGGAATCACTTGATAAGTGGGAAGATATTGCTTCCAATGCTTTTGAGCACTTTGAGAGAGAGGGTAACCGTGTAATTTCAGTTGAAGAATTAGCAAGAGAATTGAATCTTGGTCCCTCAGCTTATTCAGTTCTGAGAGATTGGATAAGAAATAGTGATGGAAAGCTGAATTTACTTGGATACACAAAATTTTTGCATGGTGTGACTCCTCGTGGTTCAAACCCTAGACACCACCGGTAG 1773 0.4698 MGQCYGKTNPSPETDAAAIPASDDLPPSSVTPSVKNTPARGLLSPWRSPYPHGGGVTPSPARAATPRRIFRRPFPPPSPAKHIRASLAKRLGRGAVAARAKEGTIPEEAAVAEEEAEEEEEELDKRFGYGKNFGAKYEIGKEIGKGHFGHTCYARCKKGELKDQAVAVKIISKSKMTTAIAIEDVRREVKILKALSGHKHLIKFHDAFEDANNVYIVMELCEGGELLDRILSRGGKYPEEDAKAIVLQILSVVAFCHLQGVVHRDLKPENFLFTSKSEDADMKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSVEADIWSIGVIAYILLCGSRPFWARTESGIFRSVLRADPNFEDIPWPSVTQEAKDFVKRLLNKDYRKRLTAVQALTHPWLKDENRPVPLDILVYKQVKSYIHATPFRRAALKALSKVLTVDELPYLRAQFKLLEPNRDGYVSLDNFKMALIRHATDAMRESKVLDIIHTMEPLAYRKMDFEEFCAAAVSIYQLESLDKWEDIASNAFEHFEREGNRVISVEELARELNLGPSAYSVLRDWIRNSDGKLNLLGYTKFLHGVTPRGSNPRHHR 590
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc30308g00007 590 FunFam CDPK-related kinase 1 130 225 - -
Stsc30308g00007 590 CDD STKc_CAMK 136 398 - -
Stsc30308g00007 590 ProSiteProfiles Protein kinase domain profile. 137 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30308g00007 590 SUPERFAMILY Protein kinase-like (PK-like) 129 424 IPR011009 -
Stsc30308g00007 590 SUPERFAMILY EF-hand 425 578 IPR011992 -
Stsc30308g00007 590 MobiDBLite consensus disorder prediction 1 81 - -
Stsc30308g00007 590 ProSitePatterns Protein kinases ATP-binding region signature. 143 169 IPR017441 GO:0005524
Stsc30308g00007 590 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Stsc30308g00007 590 PANTHER SERINE/THREONINE-PROTEIN KINASE 121 564 - -
Stsc30308g00007 590 FunFam CDPK-related kinase 1 431 507 - -
Stsc30308g00007 590 Gene3D Phosphorylase Kinase; domain 1 133 223 - -
Stsc30308g00007 590 Gene3D Transferase(Phosphotransferase) domain 1 224 421 - -
Stsc30308g00007 590 Gene3D - 422 579 - -
Stsc30308g00007 590 FunFam Calcium-dependent protein kinase SK5 309 404 - -
Stsc30308g00007 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Stsc30308g00007 590 FunFam CDPK-related kinase 3 129 301 - -
Stsc30308g00007 590 SMART serkin_6 137 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30308g00007 590 Pfam Protein kinase domain 137 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc30308g00007 Stsc-Chr30308 106810 112032 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30308g00007 1 582 EF-hand Containing Proteins AT3G50530 57.121 0.0 714
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc30308g00007 Pkinase 4e-70 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30308g00007 K13412 - gmx:100796256 944.88