LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30308g00007	ATGGGCCAGTGCTACGGCAAGACCAATCCCTCGCCGGAAACTGACGCCGCCGCGATTCCAGCCTCCGACGACCTTCCTCCGTCGTCAGTCACTCCCTCGGTGAAGAACACTCCGGCGAGAGGTTTGTTGTCGCCGTGGCGGAGCCCTTACCCTCACGGAGGAGGCGTGACACCGTCTCCGGCTAGGGCGGCGACTCCGAGGAGGATTTTCCGGCGTCCTTTTCCGCCTCCGTCTCCGGCGAAGCATATTCGTGCGTCGTTGGCGAAGCGGCTGGGACGAGGCGCGGTGGCGGCGAGGGCGAAAGAGGGGACTATACCGGAGGAGGCGGCGGTGGCGGAGGAGGAGGCGGAGGAAGAGGAGGAGGAGCTGGATAAGAGGTTTGGATATGGAAAGAATTTTGGTGCAAAGTATGAGATTGGGAAGGAAATTGGGAAAGGGCATTTTGGTCATACTTGTTATGCAAGGTGTAAGAAAGGTGAATTGAAGGATCAAGCTGTGGCAGTTAAAATCATTTCCAAGTCTAAGATGACAACGGCGATAGCAATAGAAGATGTTCGGAGAGAGGTGAAGATCTTAAAAGCTCTATCTGGCCATAAGCATCTCATCAAATTTCATGATGCTTTTGAAGATGCCAACAATGTGTACATAGTGATGGAACTGTGTGAAGGTGGGGAGCTTCTTGACAGGATTTTGTCAAGGGGGGGAAAGTATCCGGAGGAGGATGCCAAGGCTATAGTTTTGCAGATTCTAAGCGTAGTTGCTTTTTGTCATCTTCAGGGTGTTGTGCACCGTGACCTAAAACCTGAGAATTTTCTGTTTACTTCAAAAAGTGAAGATGCTGATATGAAGCTTATCGATTTTGGTCTATCGGACTTCATCCGGCCAGACGAACGACTAAATGACATTGTTGGGAGTGCATATTATGTGGCACCGGAGGTACTTCACAGGTCATATAGTGTGGAAGCAGATATATGGAGTATTGGTGTGATTGCATATATCTTATTATGTGGAAGTCGACCGTTCTGGGCACGAACAGAATCTGGAATCTTTCGTTCAGTGCTCAGAGCTGATCCTAACTTCGAAGATATACCTTGGCCTTCAGTAACTCAAGAGGCCAAGGACTTTGTAAAGAGGCTCTTAAACAAGGACTACAGGAAAAGATTGACGGCTGTCCAAGCTCTAACTCACCCTTGGTTGAAGGACGAAAACCGCCCTGTACCTCTCGATATATTGGTTTATAAACAAGTGAAATCTTATATACACGCAACTCCATTCAGACGAGCAGCATTAAAGGCACTTTCAAAGGTTTTGACAGTAGACGAATTGCCCTATCTTCGGGCACAATTCAAATTGTTGGAACCAAACCGAGACGGCTACGTATCACTAGACAATTTCAAAATGGCCCTTATACGCCATGCAACCGATGCCATGAGGGAGTCAAAGGTTCTTGATATCATACACACGATGGAACCACTTGCATACAGAAAGATGGACTTTGAAGAATTCTGTGCAGCTGCAGTTAGCATATATCAATTGGAATCACTTGATAAGTGGGAAGATATTGCTTCCAATGCTTTTGAGCACTTTGAGAGAGAGGGTAACCGTGTAATTTCAGTTGAAGAATTAGCAAGAGAATTGAATCTTGGTCCCTCAGCTTATTCAGTTCTGAGAGATTGGATAAGAAATAGTGATGGAAAGCTGAATTTACTTGGATACACAAAATTTTTGCATGGTGTGACTCCTCGTGGTTCAAACCCTAGACACCACCGGTAG	1773	0.4698	MGQCYGKTNPSPETDAAAIPASDDLPPSSVTPSVKNTPARGLLSPWRSPYPHGGGVTPSPARAATPRRIFRRPFPPPSPAKHIRASLAKRLGRGAVAARAKEGTIPEEAAVAEEEAEEEEEELDKRFGYGKNFGAKYEIGKEIGKGHFGHTCYARCKKGELKDQAVAVKIISKSKMTTAIAIEDVRREVKILKALSGHKHLIKFHDAFEDANNVYIVMELCEGGELLDRILSRGGKYPEEDAKAIVLQILSVVAFCHLQGVVHRDLKPENFLFTSKSEDADMKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSVEADIWSIGVIAYILLCGSRPFWARTESGIFRSVLRADPNFEDIPWPSVTQEAKDFVKRLLNKDYRKRLTAVQALTHPWLKDENRPVPLDILVYKQVKSYIHATPFRRAALKALSKVLTVDELPYLRAQFKLLEPNRDGYVSLDNFKMALIRHATDAMRESKVLDIIHTMEPLAYRKMDFEEFCAAAVSIYQLESLDKWEDIASNAFEHFEREGNRVISVEELARELNLGPSAYSVLRDWIRNSDGKLNLLGYTKFLHGVTPRGSNPRHHR	590

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30308g00007	590	FunFam	CDPK-related kinase 1	130	225	-	-
	Stsc30308g00007	590	CDD	STKc_CAMK	136	398	-	-
	Stsc30308g00007	590	ProSiteProfiles	Protein kinase domain profile.	137	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30308g00007	590	SUPERFAMILY	Protein kinase-like (PK-like)	129	424	IPR011009	-
	Stsc30308g00007	590	SUPERFAMILY	EF-hand	425	578	IPR011992	-
	Stsc30308g00007	590	MobiDBLite	consensus disorder prediction	1	81	-	-
	Stsc30308g00007	590	ProSitePatterns	Protein kinases ATP-binding region signature.	143	169	IPR017441	GO:0005524
	Stsc30308g00007	590	ProSiteProfiles	EF-hand calcium-binding domain profile.	440	475	IPR002048	GO:0005509
	Stsc30308g00007	590	PANTHER	SERINE/THREONINE-PROTEIN KINASE	121	564	-	-
	Stsc30308g00007	590	FunFam	CDPK-related kinase 1	431	507	-	-
	Stsc30308g00007	590	Gene3D	Phosphorylase Kinase; domain 1	133	223	-	-
	Stsc30308g00007	590	Gene3D	Transferase(Phosphotransferase) domain 1	224	421	-	-
	Stsc30308g00007	590	Gene3D	-	422	579	-	-
	Stsc30308g00007	590	FunFam	Calcium-dependent protein kinase SK5	309	404	-	-
	Stsc30308g00007	590	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	261	273	IPR008271	GO:0004672\|GO:0006468
	Stsc30308g00007	590	FunFam	CDPK-related kinase 3	129	301	-	-
	Stsc30308g00007	590	SMART	serkin_6	137	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30308g00007	590	Pfam	Protein kinase domain	137	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30308g00007	Stsc-Chr30308	106810	112032	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30308g00007	1	582	EF-hand Containing Proteins	AT3G50530	57.121	0.0	714

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Stsc30308g00007		Pkinase	4e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30308g00007	K13412		-	gmx:100796256	944.88