Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30308g00002 ATGTTTGACCAAATGGAATATGCAACATATTCATCAGCAGAAGTTTGTGAAGGCTTTGAAACTCCACCATCAGCATCAGCAGCAGCAGCATCAAATTCATCTTCATCAATTTCATCCATGATGATGATGAGTAATAATAATAAGAAGAAGAACAGTAGTAGGAACAGCAGCAATAACAACAACAACAATACAAGGAGGTTCAGTGATGAACAGATCAAGTCATTGGAATCAATATTTGAGAATGAATCAAGGCTTGAGCCAAGGAAGAAGCTTCAACTTGCAAGGGAGCTTGGTTTGCAGCCAAGGCAGGTTGCTATTTGGTTTCAGAACAAGAGAGCTAGGTGGAAGTCAAAGCAGCTTGAGAGAGATTACAACATTCTCAGAAACAATTACAACAATTTGGCTTCAAGGTTTGAGTCACTCAAGAAGGAGAAGCAAGCATTATTAATTCAGTTGCAGAAGCTGAATGATCTAATACAGAAGCCATCAATGGAGAAGAAAGCTCATCAGAGTTGTAATAAAGAAGCTAAGAGCATGGACAGTGAATCAGAGAATGGAGACACAACAAAGAGTGGTGAAGCTGATGAGGCCAAACCAATAAGCCAATCATCAATGGCAGCAAGATCATCAGAACATGCAGTTCCCTGTGGTGGTGGTGGTGGTCTCTCAGATGATGACACAAGCATCAAAGTTGAGTACTTTGGAAACATGGAAGATGAGCTTGTGAATTTTGCTCATGATCATGGTGATGGTGGTTCTTTGACATCACCAGAAGATTGGGGTAATTTTGATTCTGATGATCTATTAGGCCAATCAACCAGTGATTACCAATGGTGGGACTTCTGGTCCTGA 852 0.4061 MFDQMEYATYSSAEVCEGFETPPSASAAAASNSSSSISSMMMMSNNNKKKNSSRNSSNNNNNNTRRFSDEQIKSLESIFENESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYNILRNNYNNLASRFESLKKEKQALLIQLQKLNDLIQKPSMEKKAHQSCNKEAKSMDSESENGDTTKSGEADEAKPISQSSMAARSSEHAVPCGGGGGLSDDDTSIKVEYFGNMEDELVNFAHDHGDGGSLTSPEDWGNFDSDDLLGQSTSDYQWWDFWS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30308g00002 283 CDD homeodomain 65 119 IPR001356 GO:0003677
Stsc30308g00002 283 MobiDBLite consensus disorder prediction 161 194 - -
Stsc30308g00002 283 Gene3D - 28 122 - -
Stsc30308g00002 283 SUPERFAMILY Homeodomain-like 60 130 IPR009057 -
Stsc30308g00002 283 PRINTS Lambda-repressor HTH signature 89 98 IPR000047 GO:0003677
Stsc30308g00002 283 PRINTS Lambda-repressor HTH signature 98 114 IPR000047 GO:0003677
Stsc30308g00002 283 Pfam Homeobox associated leucine zipper 118 159 IPR003106 GO:0006355|GO:0043565
Stsc30308g00002 283 Coils Coil 110 158 - -
Stsc30308g00002 283 MobiDBLite consensus disorder prediction 244 267 - -
Stsc30308g00002 283 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Stsc30308g00002 283 MobiDBLite consensus disorder prediction 25 68 - -
Stsc30308g00002 283 MobiDBLite consensus disorder prediction 161 224 - -
Stsc30308g00002 283 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Stsc30308g00002 283 SMART HOX_1 61 122 IPR001356 GO:0003677
Stsc30308g00002 283 Pfam Homeodomain 65 116 IPR001356 GO:0003677
Stsc30308g00002 283 MobiDBLite consensus disorder prediction 22 69 - -
Stsc30308g00002 283 MobiDBLite consensus disorder prediction 195 209 - -
Stsc30308g00002 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 41 229 IPR045224 GO:0003700
Stsc30308g00002 283 FunFam Homeobox-leucine zipper protein ATHB-7 36 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30308g00002 Stsc-Chr30308 43834 45739 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30308g00002 57 283 Homeobox Transcription Factor Family AT2G46680 52.521 1.31e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc30308g00002 Homeodomain 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30308g00002 K09338 - gmx:100811208 282.337