Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30306g00001 ATGGAGAAACTGAAATTACCTGTTAAGTATGATCCTGATTCTGCTGGAAGTGATAAGCCAGATTCATTTCCAATATTTAAACTTCCTGTGAGTGAAGATCTTAGAAGAGAGGAACATGGACCGGCGATCACATCCTCTAATTCTTCTGGCAAGAGAGAACCTGTGAACAAGAAGTGGATGGCATTCAACAATGATGGAAACTCTGCAATGAACAATCTTTCAGAGCCTAAAGTCAATGATTTGAGGAATCATGGGACTTTGACCGAAGCAAGCATAGCTGAGAGAACTGCTGAATGGGGTATTCCAATGAACTCAAGTAGTGTAAAGGCAATAGTAGAGAAAACAAGCTCCTCTTCTGATGGTGACAGAACCAAAAACTTATCAGATAGATTTGTTGAATCAACAAGGACATCTGGGGACTCGAACTATGGATCCGAATCAGGAGTGTTTCCAAGGGTCTCACAAGAGTTGAAAGAAGCCTTGGCGACGCTGCAACAAACTTTTGTTGTCTCTGATGCAACCAAGCCAGACTGTCCTATCATGTATGCCAGCAGTGGCTTTTTCAATATGACTGGTTATGCTTCAAAGGACGTTATTGGAAGGAATTGTCGATTTCTTCAGGGGCCTGAAACAGACATGGATGAAGTGGCGAAAATTCGGGATGCAGCTAGAAATGGGAAAAGTTATTGTGGAAGGCTTTTAAACTACAAGAAAGATGGAACTCCCTTCTGGAATCTTCTCACAATTACCCCCATCAAAGATGACAATGGCAACACTATCAAATTCATTGGAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGATTGAGCGAAAAGGTGTTACGACCAAATGGATTGCCTACATCATTGATTCGTTATGATGCTCGTCAGAAGGAGAGAGCTTTAGGTTCCATCACCGAGGTTGTCCAAACTGTGAAGGATCCAAAATCCTCTAGTAGGCTTGTGATTGAAGAAAATGCTACCAAGCATGAAGAGCAAGAGAATCCTGATTTTGATTTTGCTTTGCCAAAGTCTGTTGAAGCTGGGAACACAAGTAAATTTAGCAAACAAACTCCTCCCAAGAATTCTGAAACTGATGTATCACGCTTGAGTTCTTATGAGGAGAGGAGCAAGGCTTCAAGAAAATCATCACGGGCTTCTTTCAAGGGTTTGAAGGTGAGAACAAGCTCTACAGGGAGAGATGAGGAGAAACCCATCATTGAACCAGAGGTATTGATGACCAAGGAAGTAACGCGGACCGAAAGCTGGGAGCGTGCTATATTTGCATCTGATAGCTTCCTTGAACTTACCGAATATACTCGAGAAGAAATTTTGGGAAGAAATTGTCGGTTTCTTCAAGGACCAGAAACAGATCAAGCAACTGTCCAAAGGATTAGAGATGCCATCAGAGAGCAGAGGGAAATTACTGTTCAGTTGATCAATTATACTAAGAGTGGAAAGAAGTTCTGGAATTTATTTCATTTACAACCTATGCGTGACCAAAAGGGTGAACTTCAGTACTTCATTGGTGTTCAATTAGATGGAAGTGATCATGTCGAACCCTTAAAAAATCGCCTGTCTGAGAATGCTGAGCTACAAAGTGCTAAGTTGGTAAAAGCCACTGCAGAAAACGTTGATGAAGCTGTCCGAGAGCTTCCTGATGCCAACTTGAGGCCAGAAGATTTATGGGCAATTCATTCTCAACCTGTCTTTCCACTACCTCACAAGAAGGATAATCCTTCTTGGGTAGCAATAAAAAAGATAGCTGCAAGAGGTGAAAAAATTGGCCTGCAACATTTTTCGCCTATTAGGCCATTGGGTTGTGGAGACACTGGCAGTGTTCATCTCGTGGAACTCCAAGGTACCGACGAACTATATGCAATGAAGGCAATGGAAAAGTCTATAATGTTAAACCGTAACAAGGTTCACCGAGCATGCATCGAGAGAGAGATTATATCATTACTAGATCATCCTTTTCTTCCAACATTGTACACTTCATTTGAGACTTCCACACATGTGTGTTTGATTACTGACTTCTGCGCCGGGGGAGAGGTGTTTGCATTGCTCGACAAGCAACCTATGAAGATTTTCAAAGAGGAGTCAGCAAGATTTTATGCAGCAGAGGTTGTGATTGGTTTGGAATATCTGCACTGCTTAGGTATAATTTATCGAGATTTAAAGCCCGAAAATATATTACTTAACAAGGAAGGCCATGTTGTATTGACTGACTTTGATCTATCATTCATGACAAATTGTAAACCCCAGGTTCTTAAGCATCCGCCACCTAGCAGTAGAAGAAGATCGCGAAGTCAACCACCTCCGACATTTGTTGCAGAGCCAGTTTCACAATCAAATTCATTTGTTGGAACTGAAGAATACATAGCTCCTGAAATTATTACTGGAGCTGGGCATAGTAGTGCCATTGATTGGTGGACCCTTGGAATCTTGCTGTATGAGATGCTCTATGGTCGTACACCGTTTCGAGGAAAGAATAGACAGAGGACATTTGCCAACATCTTGCACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCAAGCCTTGCAGCAAGGCAATTGATCAATGCACTACTCCAAAGAGATCCGGCCAGTCGTCTAGGCTCGACCACCGGGGCCAATGAGATCAAACAACATCCGTTCTTCCGCGGAATCAATTGGCCTTTAATTCGCAACATGAATCCACCTCCATTAGAGGTTCCTCTAAAATTGATAGAAAAGGTTCCAGTGGCCAAGGATGTAAAGTGGGAAGATGATGGTGTTCTTTCTACCTCAATTGATATGGATAATATTTTCTGA 2814 0.4229 MEKLKLPVKYDPDSAGSDKPDSFPIFKLPVSEDLRREEHGPAITSSNSSGKREPVNKKWMAFNNDGNSAMNNLSEPKVNDLRNHGTLTEASIAERTAEWGIPMNSSSVKAIVEKTSSSSDGDRTKNLSDRFVESTRTSGDSNYGSESGVFPRVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFNMTGYASKDVIGRNCRFLQGPETDMDEVAKIRDAARNGKSYCGRLLNYKKDGTPFWNLLTITPIKDDNGNTIKFIGMQVEVSKYTEGLSEKVLRPNGLPTSLIRYDARQKERALGSITEVVQTVKDPKSSSRLVIEENATKHEEQENPDFDFALPKSVEAGNTSKFSKQTPPKNSETDVSRLSSYEERSKASRKSSRASFKGLKVRTSSTGRDEEKPIIEPEVLMTKEVTRTESWERAIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVQRIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSENAELQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPLPHKKDNPSWVAIKKIAARGEKIGLQHFSPIRPLGCGDTGSVHLVELQGTDELYAMKAMEKSIMLNRNKVHRACIEREIISLLDHPFLPTLYTSFETSTHVCLITDFCAGGEVFALLDKQPMKIFKEESARFYAAEVVIGLEYLHCLGIIYRDLKPENILLNKEGHVVLTDFDLSFMTNCKPQVLKHPPPSSRRRSRSQPPPTFVAEPVSQSNSFVGTEEYIAPEIITGAGHSSAIDWWTLGILLYEMLYGRTPFRGKNRQRTFANILHKDLTFPSSIPASLAARQLINALLQRDPASRLGSTTGANEIKQHPFFRGINWPLIRNMNPPPLEVPLKLIEKVPVAKDVKWEDDGVLSTSIDMDNIF 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30306g00001 937 FunFam Putative LOV domain-containing protein 684 899 - -
Stsc30306g00001 937 ProSiteProfiles PAS repeat profile. 427 472 IPR000014 -
Stsc30306g00001 937 ProSitePatterns Protein kinases ATP-binding region signature. 606 629 IPR017441 GO:0005524
Stsc30306g00001 937 ProSiteProfiles PAS repeat profile. 153 226 IPR000014 -
Stsc30306g00001 937 MobiDBLite consensus disorder prediction 755 781 - -
Stsc30306g00001 937 Gene3D Phosphorylase Kinase; domain 1 599 683 - -
Stsc30306g00001 937 MobiDBLite consensus disorder prediction 350 405 - -
Stsc30306g00001 937 CDD PAS 180 269 IPR000014 -
Stsc30306g00001 937 ProSiteProfiles PAC domain profile. 227 281 IPR000700 -
Stsc30306g00001 937 MobiDBLite consensus disorder prediction 350 367 - -
Stsc30306g00001 937 Gene3D PAS domain 415 552 - -
Stsc30306g00001 937 MobiDBLite consensus disorder prediction 1 16 - -
Stsc30306g00001 937 SUPERFAMILY Protein kinase-like (PK-like) 581 913 IPR011009 -
Stsc30306g00001 937 FunFam LOV domain-containing protein 599 683 - -
Stsc30306g00001 937 MobiDBLite consensus disorder prediction 112 148 - -
Stsc30306g00001 937 NCBIfam PAS domain S-box protein 179 270 IPR000014 -
Stsc30306g00001 937 NCBIfam PAS domain S-box protein 426 516 IPR000014 -
Stsc30306g00001 937 ProSitePatterns Serine/Threonine protein kinases active-site signature. 721 733 IPR008271 GO:0004672|GO:0006468
Stsc30306g00001 937 Gene3D Transferase(Phosphotransferase) domain 1 684 902 - -
Stsc30306g00001 937 SMART pac_2 230 272 IPR001610 -
Stsc30306g00001 937 SMART pac_2 476 518 IPR001610 -
Stsc30306g00001 937 MobiDBLite consensus disorder prediction 1 54 - -
Stsc30306g00001 937 FunFam Putative LOV domain-containing protein 167 322 - -
Stsc30306g00001 937 MobiDBLite consensus disorder prediction 368 382 - -
Stsc30306g00001 937 ProSiteProfiles Protein kinase domain profile. 600 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30306g00001 937 ProSiteProfiles PAC domain profile. 473 527 IPR000700 -
Stsc30306g00001 937 Gene3D PAS domain 167 327 - -
Stsc30306g00001 937 CDD STKc_phototropin_like 598 911 - -
Stsc30306g00001 937 MobiDBLite consensus disorder prediction 131 148 - -
Stsc30306g00001 937 Coils Coil 523 543 - -
Stsc30306g00001 937 SUPERFAMILY PYP-like sensor domain (PAS domain) 425 514 IPR035965 -
Stsc30306g00001 937 Pfam Protein kinase domain 603 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30306g00001 937 Pfam PAS domain 426 514 IPR000014 -
Stsc30306g00001 937 Pfam PAS domain 174 270 IPR000014 -
Stsc30306g00001 937 SUPERFAMILY PYP-like sensor domain (PAS domain) 174 266 IPR035965 -
Stsc30306g00001 937 CDD PAS 427 514 IPR000014 -
Stsc30306g00001 937 MobiDBLite consensus disorder prediction 116 130 - -
Stsc30306g00001 937 PANTHER FLIPPASE KINASE 1-RELATED 135 904 - -
Stsc30306g00001 937 SMART serkin_6 600 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30306g00001 Stsc-Chr30306 3380 11943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30306g00001 36 934 AGC Kinase Gene Family AT5G58140 66.314 0.0 1217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Stsc30306g00001 Pkinase 5.3e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30306g00001 K20715 - gmx:100804783 1431.77