Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30304g00019 ATGGACATACTTTACTGGTTTATACCACACACTGCGGCAGAAATTAAATGGGGCGATGAAAAGCATGAACCTGGAGAAAGAGATAATCCTACAAGGATGAGTCCAAAATCATCATTCAAGGTTTTTCTTCAAGTTGTGAAGGCAAAGAGCTTACCATGGAAG 162 0.4012 MDILYWFIPHTAAEIKWGDEKHEPGERDNPTRMSPKSSFKVFLQVVKAKSLPWK 54
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30304g00019 54 Gene3D - 1 54 IPR043150 -
Stsc30304g00019 54 PRINTS Phytochrome signature 35 53 IPR001294 GO:0006355|GO:0009584
Stsc30304g00019 54 PRINTS Phytochrome signature 2 21 IPR001294 GO:0006355|GO:0009584
Stsc30304g00019 54 Pfam Phytochrome region 2 54 IPR013515 GO:0006355|GO:0009584
Stsc30304g00019 54 SUPERFAMILY GAF domain-like 2 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30304g00019 Stsc-Chr30304 117003 117164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30304g00019 2 54 Histidine Kinase Gene Family AT2G18790 56.604 1.83e-19 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30304g00019 K12120 - cave:132186283 87.4261