Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30304g00006 ATGGGATTGTTTAGCAGTTTCTTGGGGATCATTGGTTTTGTCTTTGGAATCCCTCTTGGCCTCTTGGTAGGGTTCTTTGTGTTTGTTTACTCAGAAACAAAACAAGTCAAGGAACCTGTTGTTAGGCCAATCAGTGAATTAGGCCCACATGCATTGCAAGAACTTATGCCTGAGATTCCTCTTTGGGTTGATTGGTTAAACAAGTTTTTAATGGATATGTGGCCTTACCTAGACAAGGCAATCTGTGAGATTATTAGAAGCACAGCAAAACCCATTTTTGCTGAATACATTGGGAAGTATCAGATTAAAGCAATTGAGTTTGAAGAGTTAACCCTTGGTACTCTTCCTCCAACTATTTGTGGTATTAAAGTCTTAGAAACAAATGAAAAGGAATTGGTCATGGAACAAGTTATCAAATGGGCTGGAAATCCTAACATAGTGCTGAATTTGCAAGTGTCATCTTTGAACATCAGAGTTCAGTTGGTCGACTTACAAGTATTTGCAACGGCAAGGATAACTTTAAGACCTTTAGTTCCAACATTTCCATGTTTTGCAAAGGTTGTGGTATCTTTGCTGGAGAAGCCTCATGTGGATTTTGGGATGAAAATATCAGGAGGAGACATCATGTCAATACCTGGTCTTTATAGATTTGTTCAGGAAACGATTAAAAAACAAGTCGCAAGTCTCTATCTCTGGCCTCAAACACTAGAAGTTCCTATTCTTGACGAATCGACGGTGGCGATAAAGAAGCCTGTGGGAATATTACATGTGAATGTGGTTCGAGCACAAAGGCTTCTGAAGATGGATTTGCTGGGAACTTCTGATCCTTATGTCAAACTAAGCCTCACTGGGGACAAACTTCCAGCAAAGAAAACCACTGTTAAGAGGAAGAATTTGAATCCTGTGTGGAATGAGAAGTTCAAGCTTGTTGTAAAGGACCCTCCATCTCAAGTTCTCCAATTACAAGTCTTTGACTGGGACAAGGTTGGTGCACATGACAAGCTGGGAATGCAATTAGTCCCTCTTAAGATGCTTAAACCATATGAGAACAAGGAATTCACACTTGATTTGGTGAAGGACACAAACATAAATGAAACTCCAAGTAAGAAGGCAAGAGGGCAAATTGTGGTGGACTTGACATTTGTTCCATTTAAAGAAGATAGTATCAAGTTTGGTGGGAACTTAGAAGGGTATGGAAGAAAGGAAAGTGGAAGTGATGTGGTATCTGATGATGAGGTGGAAGAAGGAGCTGGTTTGCTTTCAGTTTTGATCCAAGAGGCTGAGGAGGTTGAAGGGGAGCATCACAACAACCCTTTTGCTGTCTTGATCTTTAGAGGCGAAAAGAGAAAGACCAAGGTAATGAAGAAAACTCGACACCCACGTTGGAATGAAGAGTTCCAATTCATGCTAGAGGAGCCACCTCTACATGAGAAGATACACATTGAAATTATGAGCAAGAGGAAGACCTTTAGCTTTTTCTCAAAGGAATCACTGGGGCATGTTGAGATTAACCTGAATGATGTAGTGCACAATGGTCGCATTAATGATAGATACCATCTTATAAATTCAAAGAATGGTGAGCTACTTGTTGATATACGATGGAATGTCGTTTGA 1614 0.4021 MGLFSSFLGIIGFVFGIPLGLLVGFFVFVYSETKQVKEPVVRPISELGPHALQELMPEIPLWVDWLNKFLMDMWPYLDKAICEIIRSTAKPIFAEYIGKYQIKAIEFEELTLGTLPPTICGIKVLETNEKELVMEQVIKWAGNPNIVLNLQVSSLNIRVQLVDLQVFATARITLRPLVPTFPCFAKVVVSLLEKPHVDFGMKISGGDIMSIPGLYRFVQETIKKQVASLYLWPQTLEVPILDESTVAIKKPVGILHVNVVRAQRLLKMDLLGTSDPYVKLSLTGDKLPAKKTTVKRKNLNPVWNEKFKLVVKDPPSQVLQLQVFDWDKVGAHDKLGMQLVPLKMLKPYENKEFTLDLVKDTNINETPSKKARGQIVVDLTFVPFKEDSIKFGGNLEGYGRKESGSDVVSDDEVEEGAGLLSVLIQEAEEVEGEHHNNPFAVLIFRGEKRKTKVMKKTRHPRWNEEFQFMLEEPPLHEKIHIEIMSKRKTFSFFSKESLGHVEINLNDVVHNGRINDRYHLINSKNGELLVDIRWNVV 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30304g00006 537 CDD SMP_SYT 60 240 - -
Stsc30304g00006 537 Gene3D C2 domain 419 537 IPR035892 -
Stsc30304g00006 537 ProSiteProfiles C2 domain profile. 400 518 IPR000008 -
Stsc30304g00006 537 FunFam Synaptotagmin-2 isoform A 248 403 - -
Stsc30304g00006 537 Pfam C2 domain 253 352 IPR000008 -
Stsc30304g00006 537 Pfam C2 domain 419 519 IPR000008 -
Stsc30304g00006 537 FunFam Extended synaptotagmin-2 419 536 - -
Stsc30304g00006 537 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 59 241 IPR031468 GO:0008289
Stsc30304g00006 537 PRINTS C2 domain signature 319 327 IPR000008 -
Stsc30304g00006 537 PRINTS C2 domain signature 270 282 IPR000008 -
Stsc30304g00006 537 PRINTS C2 domain signature 297 310 IPR000008 -
Stsc30304g00006 537 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 534 IPR035892 -
Stsc30304g00006 537 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 250 385 IPR035892 -
Stsc30304g00006 537 SMART C2_3c 254 354 IPR000008 -
Stsc30304g00006 537 SMART C2_3c 419 517 IPR000008 -
Stsc30304g00006 537 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 64 240 IPR039010 -
Stsc30304g00006 537 ProSiteProfiles C2 domain profile. 232 355 IPR000008 -
Stsc30304g00006 537 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 10 534 IPR045050 GO:0008289
Stsc30304g00006 537 CDD C2 437 521 - -
Stsc30304g00006 537 CDD C2 255 357 - -
Stsc30304g00006 537 Gene3D C2 domain 248 392 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30304g00006 Stsc-Chr30304 32713 36505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30304g00006 252 336 C2H2 Transcription Factor Family AT4G05330 41.176 9.40e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30304g00006 - - gmx:100813029 946.421