Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30303g00019 ATGAGGTGTACTTTGCTGACCGCACTAGAGTCTACTAGGAAACCACGAAACAACCACAATGCTACTGACTATCAATCATATACAGTACTCGACAAAATCAAAGGTGTGGTGTCGAATAACGTTATTAAGGGTGAAGAAGCTAATTATCTGAAGAAGCTGAAGAAGCTGGTCCTTAGAAAACATGTGCGAGTGGATAGAAGTGAACTGCATCTCCTCTGGTGGAACCTTCAACCTCGCTTCATTGTCGTTCAAGGGACAACTCCCTTCAGGTCTCAACAACTCTTTTCCCTATCTCACACGCCTCATTCTCAATGCCCTACAACTGCTGGACCTGAGGTACAACAACTTCACCTCCGGAACCTAAATACTTTGGAGCAGTTCGCCTTGGATAACAATACCAACCTCGCACCCTGGACACTATTTTCCACCAATGTAGCTGACTGCTCTTCGCTATCCCTCCTCTCTCTTGTCAAATTGCAAGGAGTTGCAAATACACCTAATTCTCTCATGAATCAATCCATGTTGTGGCAGATCGTCCTGGCCCTTGCCACCACACTGTCTCAGGCATTTGTGTATCCGTTTCTCTTGGCGCGCACCTGGCGAGGCAACAATCCCTGTAAAGGCTGGAGTTTCATCACGTGCGATATACAGGACAAAATCATAACGGTCAATTTGACGAAGCTGAATCTCAACGGAACCATCTCACCCGCCTTTGCCAATTTAACTGATCTGCAACAACTCTATCTCAGCGGCAATAATTTAAAGGGATCAATACCTGAGAGCCTGACCACTTTATCTCAACTCAAGATTCTCGATGTCTCCCACAACAACTTATCAGAAGCCATTCCCAGATTCTCGCAAGGCATCACGCTCAATACTTCAAATAATTTTTTTCTTATTACTGCTCATTCTCCTCATCCATCACCACTTCCTCTCTCGACTAAATTAGGTATTGCTGCAAGTAGTGTTGTTGGAGTTCTTGTAATCTTTGGAGTGATTATTTTTATCCGTAGGAAGCGTTTTAATTTAGTAGAAAAGATCATGTTGAGGAGGGAAAGAAAACATGGCGATCACTATTTTGAAAATCTCATTGAAAGTTATGGTTCCTTGACTCTTAAGAGATATACATATAAAGAAATAAAAAGGATGACAAACTCATTTAAAGAAAAATTAGGAGAAGGAGGATATGGTATTGTCTATAAAGCAAGTTTGGCTAATAACGGTCAACAAGTGGCAGTAAAAATACTGAAGGAGTCAAAGGGAAGTGTGAAAGAATTTGTAGATGAAGTTTTTATCATTAGTAGGACGTCTCATGTGAATATTGTTTCACTTGTGGGATTTTGTTATGATAACAACAAAAGAGCACTTGTCTATGAATTCATTCATAATGACTCTTTAGATAAGTTCACTTGTAGAAAAGATTCTTCAAGCACTACTCATGATTTGGATTGGAACACCTTGTATCAGATCTCAATAGGAATTGCTCGAGGACTAGAATATCTACATCGAGGATGTAATACAAGAATTTTGCATCTTGATATTAAACCTCAAAATATTCTCCTGGACGAGCATTTTCGCTCAAAGATTGCAGATTTTGGATTGGCTAAAATATGTAAGAAGGATCAAAGTATTGTATCCATAGCGGGTACAAGAGGAACTCCAGGGTATATTGCGCCAGAAGTATTTAGCCGAGCATATGGCGAAGTTTCTCACAAATCTGATGTGTATAGTTATGGTATGTTGGTCCTTGAAATTATTGGAGGAAGAAGGAACTACTACGAGAATGTAGAATCACAAGCCGGCCAAATTTGCTTCCCAGATTGGATTTACAAAGATCTTGAACAAGGTAACATTCCTACCAAGTGTTTGCCCCACAGAGAAGAAGAAAATGATATTGCAAAGAAAATGACTCTAGTGAGCTTATGGTGTATCCAACCAGATCCATTGAATAGACCTTCTATTAGTAAAGTAATAGACATGTTAGAAGGATCAGTCGATTCAATACCATATCCTCCAAAATCAGACTTATTTTCTTCTGAAAGATTAATTTCACAATGTACAGATGTATCTAGTAGTAATAGATACGAGACAAGTTCAACAACAGAAGAAATTCTATCAGAAAAAAGGTAA 2130 0.393 MRCTLLTALESTRKPRNNHNATDYQSYTVLDKIKGVVSNNVIKGEEANYLKKLKKLVLRKHVRVDRSELHLLWWNLQPRFIVVQGTTPFRSQQLFSLSHTPHSQCPTTAGPEVQQLHLRNLNTLEQFALDNNTNLAPWTLFSTNVADCSSLSLLSLVKLQGVANTPNSLMNQSMLWQIVLALATTLSQAFVYPFLLARTWRGNNPCKGWSFITCDIQDKIITVNLTKLNLNGTISPAFANLTDLQQLYLSGNNLKGSIPESLTTLSQLKILDVSHNNLSEAIPRFSQGITLNTSNNFFLITAHSPHPSPLPLSTKLGIAASSVVGVLVIFGVIIFIRRKRFNLVEKIMLRRERKHGDHYFENLIESYGSLTLKRYTYKEIKRMTNSFKEKLGEGGYGIVYKASLANNGQQVAVKILKESKGSVKEFVDEVFIISRTSHVNIVSLVGFCYDNNKRALVYEFIHNDSLDKFTCRKDSSSTTHDLDWNTLYQISIGIARGLEYLHRGCNTRILHLDIKPQNILLDEHFRSKIADFGLAKICKKDQSIVSIAGTRGTPGYIAPEVFSRAYGEVSHKSDVYSYGMLVLEIIGGRRNYYENVESQAGQICFPDWIYKDLEQGNIPTKCLPHREEENDIAKKMTLVSLWCIQPDPLNRPSISKVIDMLEGSVDSIPYPPKSDLFSSERLISQCTDVSSSNRYETSSTTEEILSEKR 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30303g00019 709 SUPERFAMILY L domain-like 179 298 - -
Stsc30303g00019 709 FunFam S-receptor-like serine/threonine-protein kinase 354 460 - -
Stsc30303g00019 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 509 521 IPR008271 GO:0004672|GO:0006468
Stsc30303g00019 709 FunFam PR5-like receptor kinase 461 671 - -
Stsc30303g00019 709 Pfam Protein kinase domain 387 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30303g00019 709 Gene3D Phosphorylase Kinase; domain 1 361 460 - -
Stsc30303g00019 709 Pfam Leucine rich repeat 224 278 IPR001611 GO:0005515
Stsc30303g00019 709 ProSiteProfiles Protein kinase domain profile. 385 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30303g00019 709 PANTHER RUST RESISTANCE KINASE LR10-RELATED 367 683 IPR045874 GO:0004672
Stsc30303g00019 709 SMART serkin_6 385 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30303g00019 709 FunFam Leucine-rich repeat receptor-like kinase 177 302 - -
Stsc30303g00019 709 Gene3D Ribonuclease Inhibitor 176 302 IPR032675 -
Stsc30303g00019 709 SUPERFAMILY Protein kinase-like (PK-like) 362 662 IPR011009 -
Stsc30303g00019 709 Gene3D Transferase(Phosphotransferase) domain 1 461 668 - -
Stsc30303g00019 709 ProSitePatterns Protein kinases ATP-binding region signature. 391 414 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30303g00019 Stsc-Chr30303 72560 75742 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30303g00019 310 673 Receptor kinase-like Gene Family AT1G66910 50.407 1.22e-116 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc30303g00019 Pkinase 3.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30303g00019 - K00924 aip:107635702 584.719