Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30303g00017 ATGTTGAGGAGAGAAAGAGAGCATGGGGATCAATATTTTGAAAATCTCATTGAAAGTTATGGCTCCTTGAGTCTTAAGCGAACGTCTCATGTGAATATTGTTTCACTTTTGGGATTTTGTTATGATAAGAATAAAAGAGCACTTGTTTATGAATTTATGCAAAATGATTCTTTGGATAAGTTCACTTATAGAAAAGATTCTTCTAGTACTACTCATAATTTGGAGTGGAACACCTTGTATCAGATCTCAATGGGAATTGCTCGAGGTCTAGAATATCTACATCGAGGATGTAATACAAGAATTTTGTATCTTGATATTAAATCTCAAAATATTCTTTTAGACGAGCATTTTCATCCAAAGATTGCAGATTTTGGATTGGCAAAAATATGCAAAAAAGATCAAAGTGTTGTATCTATAATAGGTACAAGAGGAACTCCAGGGTATATTGCACCAGAAGTATTTAGCCGAGCATATGGCGAAGTTTCTCACAGATCAGACGTGTATAGTTATGGTATGCTGATTCTTGAAATTATTGGAGGAAGACAGAACTACCATGAGAGTATAGAATCACAAGCCAATGAAATTTGCTTTCCAGATTGGATTTACAAAGATCTTGAGCAAGGTAACATTCCTACCAAGTGTTTGCCCCAAAAAGAAGAAGAAAATGATATTGTAATGAAAATGACTTTAGTGAGCTTATGGTGTATCCAACCAAATCCATTGAATAGACCTTCTATTGGTGAAGTAATAGACATGTTAGAAGGACCGGTTAATTCAATACCTTATCCTCCAAAACCAAACTTATTTTCTTCTGATGAAAGATTTACTCCACAATATATAGATATATCTAGTAGTATTAGATATGAGACAAGTTCAACAACAACAGAATAA 891 0.3356 MLRREREHGDQYFENLIESYGSLSLKRTSHVNIVSLLGFCYDKNKRALVYEFMQNDSLDKFTYRKDSSSTTHNLEWNTLYQISMGIARGLEYLHRGCNTRILYLDIKSQNILLDEHFHPKIADFGLAKICKKDQSVVSIIGTRGTPGYIAPEVFSRAYGEVSHRSDVYSYGMLILEIIGGRQNYHESIESQANEICFPDWIYKDLEQGNIPTKCLPQKEEENDIVMKMTLVSLWCIQPNPLNRPSIGEVIDMLEGPVNSIPYPPKPNLFSSDERFTPQYIDISSSIRYETSSTTTE 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30303g00017 296 Pfam Protein kinase domain 25 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30303g00017 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 101 113 IPR008271 GO:0004672|GO:0006468
Stsc30303g00017 296 PANTHER RUST RESISTANCE KINASE LR10-RELATED 24 272 IPR045874 GO:0004672
Stsc30303g00017 296 Gene3D Transferase(Phosphotransferase) domain 1 54 258 - -
Stsc30303g00017 296 ProSiteProfiles Protein kinase domain profile. 1 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30303g00017 296 SMART serkin_6 13 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30303g00017 296 Gene3D Phosphorylase Kinase; domain 1 1 53 - -
Stsc30303g00017 296 FunFam PR5-like receptor kinase 53 263 - -
Stsc30303g00017 296 SUPERFAMILY Protein kinase-like (PK-like) 25 253 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30303g00017 Stsc-Chr30303 66880 67953 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30303g00017 14 273 Receptor kinase-like Gene Family AT5G38260 54.198 6.80e-95 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc30303g00017 Pkinase 1.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30303g00017 - - aip:107635702 363.229