Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30303g00015 ATGAAACAGTTGGGTTCCGTAAATCTTGAGAAGAATTCCTTGGAGGGTCCCATTCCTGACTTATCAAATTGTACCAACTTGCAACAACTGATGCTCGGGGACAATAAACTAACGGGTGAAGTTCCACCTTCTCTCATGAATCTCCCATCTTTGACGCATGTTTCATTGGAAAACAACTGGCTACAGGGTCCTATGCCTCTCTTCAAAACTATTACATGGAACGTAACTCTTGAAGGAAATGGGTTCTGTTTAGATCATCCTGGACCTTGCCACCGCACTGTCTCCACTTTGCTCCAAGTAGCTCAGGCATTTGGGTATCCGCTTCTCTTGGCGCGCACGTGGCGAGGGAACAGTCCCTGTAAAGGCTGGAGTTTCATCACGTGCGATAACCAGGACAAGATCAGAACCGTCAATCTGACGAAGCTGAATCTCAACGGAACCATCTCACCGGCCTTTGGCAATTTAACTGATTTGCGAGAACTCTATCTGAGCGGCAATAATATAAAGGGATCAATACCGGAGAGTTTGACCACTTTATCTCAACTCAAGATTCTGGACGTCTCCCACAACATCTTATCAGGGGCCATTCCTAGATTCTCGCTAGGAATCATGCTCAATACTGCAAATAATAATGTTTTTCTTACTGAGCATTCTCCACCCAAAGCAAGCCCTCCTCATCCTAGTAAAGCAAGTCCAACTGCATCCACAACCACACATCACTACTGGATTAAATTAGGTGCTGGTTCTGCAGCTTGTGTTGTCGGAGTTCTTGGAGTGATTATTTTTATCTGTCGTAAGAGGTGTTTTAATTTAGTACTAAAGATAACGGTGAGGACTGAAAGAAAGCATGCTGATCACCATTTTGAAAATCTCATTCAACGTTATGGTTCTTTGAGTCTTCAGCGATATACTTATAAAGAGGTGAAAAAGATGACAAACTCATTTAAAGAAAAATTAGGAGAAGGAGGATATGGCATTGTCTATAAAGCAAGTTTAGCTGATAGTCAACAGGTGGCAATAAAAATATTGAAGGAGTCAAAGGGAAGCTTGGAAGAATTTGTAGATGAGAATATTCTTCTTGACAAGCATTTTCACCCAAAGATTGCAGATTTCGGATTGGCTAAAATATGCAAGAAGGATCAAAATATTGTATTTATGGCGGGTACAAGAGAAATTCCGGGATATATTGCACCAGAAGTATTTAGCCGAGCATATGGCAAAGTTTCTCACAAATCTGATGTGTATAGCTATGGTATGTTGATTCTTGAAATTATTGGAGAAAGACAGAACTACTACAAGATTGTAGAATCACAAGCCAGTCAAATTTGCTTTCCAGATTGGATTTACAAAGATATTGAGCAAGGTGGCCCTCCCGGCGCCTCCGTAGCTCTTGCTTTGGATCCCTTCGCCAATAGCCTCTGTGTGGTATCCGATAACGAGTTATTGGGTGAAGAAGCAGCTTATATGAAGAAGCTTAGGAAGGCCATATCCCCTGTTCCCGCCAACTGGTTCACCGCCCCCAACATGTGCGACTGGAGCAACGTGCTGTGTACGGAAGGTGTCCTCAGCCGCACCGTAGAATCAATCAACCTCGAAGGCAAGTCCCTTAAGGGAGAACTCCCTCCAGGTCTCAACAACTCCTTACCAAACCTCAAAACCCTTGTTCTCACTAACAATTCTCTCACTGGCCCTCTCCCCTCCTTTGCTGGCCTCTCTAACCTCCAAGAGCTGAAACTGGGATTCAACAAATTCATCTCCGTCCCTGACGGTTGTTTCCAGGGCCTAACAAGTTTGCAGGAGTTCCACTTTCATAACAACACCAACCTCTCACCCTGGACATTTCCCGCTACTTTGAGTGCCTCCTCTAAGCTCAACATACTCGATCAGGACTCTTCCAATCTCATGGGCTTCTTGCCAGATATATTTGATTCCCTATCTGATTTGGAGATTCTTGATCTCTCTTCTAACAACCTCACTGGTATCTTGCCCAACTCATTCTCAAAACTACTCAATCTAAAACGGTTGTATCTCTTCAGCGACGATCAGCACAGGTTTTCGGGTAAAATTGGATTCCTTTCATCCATGACCCATTTGGAATCTTTGTGGCTTCAGGGGAACTCCTTCCAGGGTCCAATTCCTGATTAA 2145 0.4373 MKQLGSVNLEKNSLEGPIPDLSNCTNLQQLMLGDNKLTGEVPPSLMNLPSLTHVSLENNWLQGPMPLFKTITWNVTLEGNGFCLDHPGPCHRTVSTLLQVAQAFGYPLLLARTWRGNSPCKGWSFITCDNQDKIRTVNLTKLNLNGTISPAFGNLTDLRELYLSGNNIKGSIPESLTTLSQLKILDVSHNILSGAIPRFSLGIMLNTANNNVFLTEHSPPKASPPHPSKASPTASTTTHHYWIKLGAGSAACVVGVLGVIIFICRKRCFNLVLKITVRTERKHADHHFENLIQRYGSLSLQRYTYKEVKKMTNSFKEKLGEGGYGIVYKASLADSQQVAIKILKESKGSLEEFVDENILLDKHFHPKIADFGLAKICKKDQNIVFMAGTREIPGYIAPEVFSRAYGKVSHKSDVYSYGMLILEIIGERQNYYKIVESQASQICFPDWIYKDIEQGGPPGASVALALDPFANSLCVVSDNELLGEEAAYMKKLRKAISPVPANWFTAPNMCDWSNVLCTEGVLSRTVESINLEGKSLKGELPPGLNNSLPNLKTLVLTNNSLTGPLPSFAGLSNLQELKLGFNKFISVPDGCFQGLTSLQEFHFHNNTNLSPWTFPATLSASSKLNILDQDSSNLMGFLPDIFDSLSDLEILDLSSNNLTGILPNSFSKLLNLKRLYLFSDDQHRFSGKIGFLSSMTHLESLWLQGNSFQGPIPD 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30303g00015 714 ProSiteProfiles Leucine-rich repeat profile. 647 668 IPR001611 GO:0005515
Stsc30303g00015 714 FunFam Leucine-rich repeat receptor-like kinase 92 216 - -
Stsc30303g00015 714 SUPERFAMILY L domain-like 501 714 - -
Stsc30303g00015 714 Pfam Leucine rich repeat N-terminal domain 96 129 IPR013210 -
Stsc30303g00015 714 Pfam Leucine rich repeat N-terminal domain 485 517 IPR013210 -
Stsc30303g00015 714 PRINTS Leucine-rich repeat signature 645 658 - -
Stsc30303g00015 714 PRINTS Leucine-rich repeat signature 182 195 - -
Stsc30303g00015 714 ProSiteProfiles Protein kinase domain profile. 239 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30303g00015 714 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Stsc30303g00015 714 Gene3D Ribonuclease Inhibitor 483 714 IPR032675 -
Stsc30303g00015 714 Gene3D Ribonuclease Inhibitor 1 90 IPR032675 -
Stsc30303g00015 714 Gene3D Ribonuclease Inhibitor 92 215 IPR032675 -
Stsc30303g00015 714 SUPERFAMILY Protein kinase-like (PK-like) 300 433 IPR011009 -
Stsc30303g00015 714 PANTHER OSJNBA0070M12.3 PROTEIN 356 431 - -
Stsc30303g00015 714 SUPERFAMILY L domain-like 2 199 - -
Stsc30303g00015 714 Pfam Protein tyrosine and serine/threonine kinase 356 435 IPR001245 GO:0004672|GO:0006468
Stsc30303g00015 714 Gene3D Transferase(Phosphotransferase) domain 1 306 354 - -
Stsc30303g00015 714 Gene3D Transferase(Phosphotransferase) domain 1 355 461 - -
Stsc30303g00015 714 ProSiteProfiles Leucine-rich repeat profile. 157 180 IPR001611 GO:0005515
Stsc30303g00015 714 Pfam Leucine rich repeat 134 190 IPR001611 GO:0005515
Stsc30303g00015 714 Pfam Leucine rich repeat 623 680 IPR001611 GO:0005515
Stsc30303g00015 714 Pfam Leucine rich repeat 525 584 IPR001611 GO:0005515
Stsc30303g00015 714 SMART LRR_typ_2 155 179 IPR003591 -
Stsc30303g00015 714 SMART LRR_typ_2 548 570 IPR003591 -
Stsc30303g00015 714 SMART LRR_typ_2 595 616 IPR003591 -
Stsc30303g00015 714 SMART LRR_typ_2 571 594 IPR003591 -
Stsc30303g00015 714 SMART LRR_typ_2 645 668 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30303g00015 Stsc-Chr30303 52879 58838 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30303g00015 243 455 Receptor kinase-like Gene Family AT1G66930 35.316 1.79e-44 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc30303g00015 PK_Tyr_Ser-Thr 3.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30303g00015 K00924 - ahf:112743101 324.324