Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30303g00013 ATGACAAAGTGGTTTAGTGAAAAATTAGGAGAAGGAGGTTATGGCATTGTCTATAAAGCAAGTATAGCCGATGGTCAACAGGTTGCAGTGAAAGTACTCAAAGAGTCAAAAGGAAGTGTGGAAGAATTTATAGATGAGATTTTTATCATTAGCAGAACATCCCATGTGAACATTGTTTCACTTCTGGGATTTTGTTATGAGAAAAATAAAAGAGCATTGATCTATGAATTCATGCATAATGACTCTTTACATAAGTTCTCTTATAAACAAGATTCTGCTAATAATCTTTGTAATTTGGAATGGAGCACCTTACACCAAATTTCAATTGGAATTGCTCGGGGACTTGAATATTTGCATCGAGATATTGTAGACTTCGGATTGGCTAAAATATGTAAGAAGGATCAAAGTATTGTATTTATATTAGGTACAAGAGGAACTCCTGGATACATTGCACCAGAAATTTTCAGCCGAACTTACGGTGGAGTTTCTCATAAATCTGATGTATATAGCTATGCCATGTTGATTCTTAAAATTATCGGAGGAAGAGAGAATTACCATGAGAATGGAGGATCACACACCAGTGAAGCTTTTCCAGATTGGATCTACAAAGATCTTGAGCAAGGAAATGTTCCTACAAGGTGCTTGCCCCTCATAGAAGAAGAAAATGACATGGTAATGAAGATGACTTTAGTGAGTTTATGGTGTATTCAACCAAATCCATTGGATAGGCCTACTATCAGTAAAGTAATAGACATGTTGGAAGGACCGTTAGAGTCAATACCATATCCTCCAAAACCTGTCTTATTTTCTCCTGAAAGACTCATCTCACAATATTCAGATATATCTTATGGCTTGGAGCATGAGACAAGTTCAACATTAGAGGACTTAGAAAAAGGGTAA 900 0.36 MTKWFSEKLGEGGYGIVYKASIADGQQVAVKVLKESKGSVEEFIDEIFIISRTSHVNIVSLLGFCYEKNKRALIYEFMHNDSLHKFSYKQDSANNLCNLEWSTLHQISIGIARGLEYLHRDIVDFGLAKICKKDQSIVFILGTRGTPGYIAPEIFSRTYGGVSHKSDVYSYAMLILKIIGGRENYHENGGSHTSEAFPDWIYKDLEQGNVPTRCLPLIEEENDMVMKMTLVSLWCIQPNPLDRPTISKVIDMLEGPLESIPYPPKPVLFSPERLISQYSDISYGLEHETSSTLEDLEKG 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30303g00013 299 ProSiteProfiles Protein kinase domain profile. 3 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30303g00013 299 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Stsc30303g00013 299 SUPERFAMILY Protein kinase-like (PK-like) 5 253 IPR011009 -
Stsc30303g00013 299 Gene3D Transferase(Phosphotransferase) domain 1 78 260 - -
Stsc30303g00013 299 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Stsc30303g00013 299 PANTHER RUST RESISTANCE KINASE LR10-RELATED 122 273 IPR045874 GO:0004672
Stsc30303g00013 299 Pfam Protein tyrosine and serine/threonine kinase 5 120 IPR001245 GO:0004672|GO:0006468
Stsc30303g00013 299 PIRSF ILK 119 261 - -
Stsc30303g00013 299 PIRSF ILK 4 123 - -
Stsc30303g00013 299 Pfam Protein kinase domain 122 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30303g00013 Stsc-Chr30303 50360 51330 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30303g00013 1 275 Receptor kinase-like Gene Family AT5G38280 51.316 1.31e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc30303g00013 Pkinase 7.4e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30303g00013 - - aip:107635702 396.356