Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30303g00008 ATGCAGGTTGATCACTATGTTGAAAATCTCATTAAAAGTTACAGTTCTTTGAGTCTTAAGCGATATACTTATAAAGAAGTGAAAAAAATGACAAAGTCGTTTAGTGAAAAATTAGGAGAAGGAGGATATGGCATTGTCTATAAAGCAAGTTTAGCTGATGGTCAACAGGTGGCAGTAAAAATACTCAAAGAGTCAAAGGGAAGTGTAGAAGAATTTATAGATGATGTTTTTATTATTAGCAGAACATCCCATGTGAACATTGTTTCACTTTTGGGATTTTGTTATGAGAAAAATAAAAGAGTATTAATCTATGAATTCATGCATAATGACTCTTTACATAAGTTCTCTTATAAAAATGACACTGCTAATAATCTTTGTAAGTTGGAATGGAGCACATTGTACCAAATTTCAACTGGAATTGCTCGGGGACTTGAATATTTGCATCGAGGATGTAATACAAGAATTTTTCATCTTGATATTAAACCTCAAAATATTCTTTTGGATGAACATTTTTTTCCTAAGATTGCAGATTTTGGATTGGCTAAAATATGCAAGAAGGATCAAAGTATTGTATCTATATTAGGTACAAGAGGAACTCCAGGATACATTGCACCAGAAGTTTTCAGTCGAACTTATGGTGGAGTTTCTCACAAATCTGATGTGTATAGCTATGACATGTTGATTCTTGAAATTATTGGAGGAAGAGAGAATTACCATGAGAATGGAGGATCACACACCAGTGAAGTTTTTCCGGATTGGATCTACAAAGATCTTGAGCAAGGAAATGTTCCTACAAGGTGCTTGCCCCTCGGAGAAGAAGAAAATGACATGGTAATGAAGATGACTTTAGCGAGTTTATGGTGTATTCAACCAAATCCATTGGATAGGCCTTCTATCAGTAAAGTAATAGACATGTTGGAAGGACCATTAGAGTCAATACCTTATCCTCCAAAACCTGTTTTATTTTCTCCTGAAAGACTCATCTCACAATATTCAGATATATCTTATGGCATGGAGCATGAGACAAGTTCAACAACAGCAGAGGAGTTAGAAAAAGGTGTTTGA 1065 0.3455 MQVDHYVENLIKSYSSLSLKRYTYKEVKKMTKSFSEKLGEGGYGIVYKASLADGQQVAVKILKESKGSVEEFIDDVFIISRTSHVNIVSLLGFCYEKNKRVLIYEFMHNDSLHKFSYKNDTANNLCKLEWSTLYQISTGIARGLEYLHRGCNTRIFHLDIKPQNILLDEHFFPKIADFGLAKICKKDQSIVSILGTRGTPGYIAPEVFSRTYGGVSHKSDVYSYDMLILEIIGGRENYHENGGSHTSEVFPDWIYKDLEQGNVPTRCLPLGEEENDMVMKMTLASLWCIQPNPLDRPSISKVIDMLEGPLESIPYPPKPVLFSPERLISQYSDISYGMEHETSSTTAEELEKGV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30303g00008 354 Gene3D Transferase(Phosphotransferase) domain 1 107 313 - -
Stsc30303g00008 354 ProSiteProfiles Protein kinase domain profile. 32 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30303g00008 354 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 329 IPR045874 GO:0004672
Stsc30303g00008 354 Gene3D Phosphorylase Kinase; domain 1 6 106 - -
Stsc30303g00008 354 FunFam PR5-like receptor kinase 107 316 - -
Stsc30303g00008 354 ProSitePatterns Protein kinases ATP-binding region signature. 38 60 IPR017441 GO:0005524
Stsc30303g00008 354 SUPERFAMILY Protein kinase-like (PK-like) 8 306 IPR011009 -
Stsc30303g00008 354 FunFam S-receptor-like serine/threonine-protein kinase 2 106 - -
Stsc30303g00008 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Stsc30303g00008 354 Pfam Protein kinase domain 35 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30303g00008 354 SMART serkin_6 32 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30303g00008 Stsc-Chr30303 29640 31666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30303g00008 19 328 Receptor kinase-like Gene Family AT5G38280 58.730 2.84e-124 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc30303g00008 Pkinase 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30303g00008 - - aip:107635702 483.796