Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30303g00007 ATGATTCAGTTCTATTCGAAGTGTCTGGTCTCGGAAAACTTGTTAGTGGATGATGAAGTTGCTTATATGAAGAAGCTTAGGGAGGCCATATCCCCTGCTCCCTCCAACTGGTTCACCATGACTGACATGTGTGCCTGGAGCTATGTGAGTTGCATCCACTACTCCACTGGCCTTAGCAGCATACAAGAAATCAAACTTGGATCCAAGTCCCTTAATGGAACACTCCCATCGGGTATCAACAACTCCTTATTAAACCTCAAAATCCTCGATCTCAGTAACAATAATCTCACTGGCCCTCTCCCTTCCTTTGCTGGTCTCATTATTCTCCAAGAGCTGAAACTGGGGCTCAACAACTTCACCTCCGTCCCAGACGGTTGTTTCCAGGGTCTAACACATTTGCGGGAGTTACACCTTGATTACAACGCCAACCTCGCACCCTGGACATTTCCCGCCACTTTGAGTGACTCCTCTATGCTCAATATACTCACTCTCTCCAATACAAACCTCATGGGCTCCTTGCCAGATGCATTTCATTCCTTCCGCGACTTGGAGGTTCTTGATATCTCTGAAAACAGCCTCACCGGATCGTTGCCCAACTCTTTTGATAAGCTACTCACTCTACAAGCGTTGTTTCTGGACAAGCAGAACAAGTTGTCCGGTAAAATTGAATTCCTTTCATCCATGACACAATTGAAATATGTGGGGCTTCGGGGGAACTCCTTTGAGGGTCATATTCCCGATCTATCGAATTGCACCAAATTGAGGGAACTGTATCTTGACGGCAATCAATTAACTGGTGTAGTTCCACCTTCTCTCGTGAATCTCTCGTTTTTGAGGCTCGTTTTATTGGACAACAACTGGCTCCAGGGTCCTACTCCTGTGTTCAAAGAGAATGTGAATGCAAGTTTCAAAGGAAATGGGTTCTGTTTGGACCACCCTGGCCCCTGTGACCACACAGTCACCACTTTGCTACAAGTTGCTGAGGCTTTTGGGCAAGATCAGAACCCTCAATTTGACAAAGCTGAACCTCACCGGAACCATCTCACCGGCATTTGCCACTTGCGAGAACTCTATCTTGGTGGGAATAGTTTAAATGGATCAATACCTGAAAGTTTAACCACTTTGTCACAACTCAAGATTCTTGATGTCTCCAACAACAACTTGTCCGGGACTGTACCCAGATTCTCCCCAAACACCATCCTCAACACAGCCAATAATGCATTTCTTGTTTGGAGTTCTCTACCACCCAAAGCAAGTCCTCCTCCTCCTCCATCTACTAATGGGGCAAGCCCAACTGCATCTAACACCACACGTCATCTTTGGATTAAATTAGATACAAGAGGAACTCCAGGATACATTGCACCAGAAGTTTTCAGCCGAACTTATGGTGGAGTATCTCATAAATCTGATGTGTATAGCTATGGCATGTTGATTCTTGAAATTATTGGAGGAAGAGAAAACTACCATGAGAATGGAGGATCACAAACCAGTGAAGTTTTTCCAGATTGGATCTACAATGATCTTAAGCAAGGAAATGTTCCTACAAGGTGCTTGCCCCTCAGAGAAGAAGAAAATGACATGGTAATGAAGATGACTTTAGTGAGTTTATGGTGTATTCAACCAAATCCGTTGGATAGGCCTTCTATCAGTAAAGTGATAGACATGTTGGAAGGATCACTAAAGTCAATACCACATCCTCCAAAACCTGTCTTATTTTCTTCTGAAAGACTCATCTCACAATATTCAGATATATCTTATGGCATGGAGCATGAAACAAGTTCAACAACAACAGTAGATGACTTAGAAAAAGGAACATCATCAGCATCTTCATCTCCAGAACAGAAAGCTCATTCTCCTCCTAATTCTGCTTCATTGCCCGAATTCGCCTTCTCCTAA 1896 0.4383 MIQFYSKCLVSENLLVDDEVAYMKKLREAISPAPSNWFTMTDMCAWSYVSCIHYSTGLSSIQEIKLGSKSLNGTLPSGINNSLLNLKILDLSNNNLTGPLPSFAGLIILQELKLGLNNFTSVPDGCFQGLTHLRELHLDYNANLAPWTFPATLSDSSMLNILTLSNTNLMGSLPDAFHSFRDLEVLDISENSLTGSLPNSFDKLLTLQALFLDKQNKLSGKIEFLSSMTQLKYVGLRGNSFEGHIPDLSNCTKLRELYLDGNQLTGVVPPSLVNLSFLRLVLLDNNWLQGPTPVFKENVNASFKGNGFCLDHPGPCDHTVTTLLQVAEAFGQDQNPQFDKAEPHRNHLTGICHLRELYLGGNSLNGSIPESLTTLSQLKILDVSNNNLSGTVPRFSPNTILNTANNAFLVWSSLPPKASPPPPPSTNGASPTASNTTRHLWIKLDTRGTPGYIAPEVFSRTYGGVSHKSDVYSYGMLILEIIGGRENYHENGGSQTSEVFPDWIYNDLKQGNVPTRCLPLREEENDMVMKMTLVSLWCIQPNPLDRPSISKVIDMLEGSLKSIPHPPKPVLFSSERLISQYSDISYGMEHETSSTTTVDDLEKGTSSASSSPEQKAHSPPNSASLPEFAFS 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30303g00007 631 SMART LRR_typ_2 83 105 IPR003591 -
Stsc30303g00007 631 SMART LRR_typ_2 251 275 IPR003591 -
Stsc30303g00007 631 SMART LRR_typ_2 130 151 IPR003591 -
Stsc30303g00007 631 SMART LRR_typ_2 375 397 IPR003591 -
Stsc30303g00007 631 SMART LRR_typ_2 180 203 IPR003591 -
Stsc30303g00007 631 SMART LRR_typ_2 106 129 IPR003591 -
Stsc30303g00007 631 ProSiteProfiles Leucine-rich repeat profile. 85 107 IPR001611 GO:0005515
Stsc30303g00007 631 Gene3D Ribonuclease Inhibitor 17 314 IPR032675 -
Stsc30303g00007 631 PANTHER OSJNBA0070M12.3 PROTEIN 15 417 - -
Stsc30303g00007 631 Gene3D Transferase(Phosphotransferase) domain 1 423 567 - -
Stsc30303g00007 631 SUPERFAMILY Protein kinase-like (PK-like) 442 593 IPR011009 -
Stsc30303g00007 631 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 123 222 - -
Stsc30303g00007 631 MobiDBLite consensus disorder prediction 589 631 - -
Stsc30303g00007 631 Pfam Leucine rich repeat 159 218 IPR001611 GO:0005515
Stsc30303g00007 631 Pfam Leucine rich repeat 85 141 IPR001611 GO:0005515
Stsc30303g00007 631 Pfam Leucine Rich Repeat 253 275 IPR001611 GO:0005515
Stsc30303g00007 631 Pfam Leucine Rich Repeat 377 400 IPR001611 GO:0005515
Stsc30303g00007 631 Pfam Leucine Rich Repeat 353 372 IPR001611 GO:0005515
Stsc30303g00007 631 ProSiteProfiles Protein kinase domain profile. 116 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30303g00007 631 PRINTS Leucine-rich repeat signature 86 99 - -
Stsc30303g00007 631 PRINTS Leucine-rich repeat signature 375 388 - -
Stsc30303g00007 631 SUPERFAMILY L domain-like 28 415 - -
Stsc30303g00007 631 Pfam Protein tyrosine and serine/threonine kinase 447 555 IPR001245 GO:0004672|GO:0006468
Stsc30303g00007 631 MobiDBLite consensus disorder prediction 414 435 - -
Stsc30303g00007 631 Gene3D Ribonuclease Inhibitor 335 411 IPR032675 -
Stsc30303g00007 631 MobiDBLite consensus disorder prediction 589 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30303g00007 Stsc-Chr30303 22944 26693 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30303g00007 444 571 Receptor kinase-like Gene Family AT1G66980 55.303 1.90e-39 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc30303g00007 PK_Tyr_Ser-Thr 1.9e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30303g00007 K00924 - gmx:100781851 320.472